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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:240.1 nTPM
HPA:240.1 nTPM
GTEx:197.3 nTPM
FANTOM5:82.6 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:176.3 nTPM
Allen mouse:12.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 240.1
Sample id Sample description nTPM
Amygdala
nTPM: 240.1
2695 Female, age 67, right hemisphere 242.5
2514 Male, age 75, right hemisphere 241.4
2814 Male, age 76, right hemisphere 241.1
1987 Female, age 91, left hemisphere 240.1
2517 Female, age 94, left hemisphere 235.5
Basal amygdala
nTPM: 235.7
2609 Male, age 75, right hemisphere 243.2
2110 Male, age 80, left hemisphere 236.8
1955 Male, age 76, both hemispheres 236.4
2243 Female, age 91, right hemisphere 235.7
2685 Female, age 94, left hemisphere 234.9
2827 Female, age 67, right hemisphere 227.5
Central amygdala
nTPM: 236.6
2515 Male, age 75, right hemisphere 241.7
1905 Male, age 76, both hemispheres 239.9
2701 Female, age 91, right hemisphere 236.1
2239 Male, age 80, left hemisphere 233.4
2826 Female, age 94, left hemisphere 232.2
Corticomedial amygdala
nTPM: 236.7
2428 Male, age 75, right hemisphere 242.9
2829 Male, age 80, left hemisphere 242.1
2429 Female, age 94, left hemisphere 239.9
2240 Male, age 76, both hemispheres 236.2
2242 Female, age 91, right hemisphere 233.5
2535 Female, age 67, right hemisphere 225.7
Lateral amygdala
nTPM: 234.2
2516 Male, age 75, right hemisphere 243.2
1883 Male, age 76, both hemispheres 238.0
2534 Female, age 94, left hemisphere 234.6
2256 Male, age 80, left hemisphere 232.5
2255 Female, age 91, right hemisphere 230.3
2830 Female, age 67, right hemisphere 226.6
Stria terminalis, bed nucleus
nTPM: 239.0
1974 Female, age 91, both hemispheres 243.9
2486 Female, age 94, both hemispheres 241.8
2201 Male, age 74, unknown 231.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 197.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 197.3
Samples: 152

Max nTPM: 583.7
Min nTPM: 119.4
Std nTPM: 59.6
Median nTPM: 182.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 583.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 452.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 424.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 414.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 343.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 330.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 285.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 281.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 279.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 278.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 277.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 273.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 257.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 251.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 246.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 245.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 243.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 242.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 241.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 239.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 239.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 236.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 236.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 235.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 233.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 226.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 225.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 223.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 222.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 222.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 222.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 220.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 218.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 215.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 213.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 210.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 210.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 209.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 209.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 207.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 207.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 206.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 205.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 204.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 203.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 203.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 203.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 203.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 202.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 202.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 202.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 201.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 201.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 201.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 198.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 196.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 196.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 195.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 194.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 194.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 194.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 194.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 193.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 193.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 193.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 193.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 191.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 191.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 191.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 188.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 188.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 186.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 184.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 183.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 183.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 182.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 182.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 181.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 181.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 181.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 180.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 180.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 180.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 180.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 179.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 178.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 177.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 176.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 176.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 175.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 174.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 174.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 173.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 173.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 172.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 171.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 171.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 171.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 171.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 170.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 170.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 169.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 169.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 168.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 168.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 168.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 168.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 167.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 167.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 167.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 166.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 166.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 166.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 166.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 165.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 164.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 164.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 164.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 164.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 162.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 161.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 161.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 160.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 159.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 158.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 158.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 157.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 157.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 156.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 155.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 155.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 154.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 154.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 153.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 153.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 152.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 151.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 150.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 148.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 147.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 147.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 145.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 145.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 142.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 140.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 136.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 136.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 131.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 125.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 124.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 124.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 119.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 82.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 82.6
FF:10151-102I7 76 years, female 82.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 5.0
Pig sample Sample description nTPM
Amygdala
nTPM: 5.1
Samples: 4

Max nTPM: 7.5
Min nTPM: 3.3
Sample A Female 7.5
Sample B Female 5.2
Sample C Male 4.2
Sample D Male 3.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 176.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 176.3
Samples: 4

Max nTPM: 194.8
Min nTPM: 166.5
Sample A Male 170.0
Sample B Male 173.7
Sample C Female 194.8
Sample D Female 166.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 12.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.8
678717 Antisense, RP_040914_02_G10, Mouse strain C57BL/6J (56 days, male) 12.8

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