MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:242.9 nTPM
HPA:242.9 nTPM
GTEx:179.1 nTPM
FANTOM5:95.0 Scaled Tags Per Million
Pig:8.9 nTPM
Mouse:114.7 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 242.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 237.1
2411 Female, age 72, unknown 243.6
1827 Male, age 72, unknown 241.1
1833 Male, age 53, unknown 240.0
1870 Female, age 42, unknown 237.9
1830 Male, age 51, unknown 237.1
2019 Male, age 18, unknown 236.3
2666 Male, age 74, left hemisphere 236.1
2586 Male, age 75, left hemisphere 233.9
2828 Female, age 72, unknown 233.0
2219 Male, age 76, both hemispheres 232.1
Dorsal raphe nucleus
nTPM: 238.6
2298 Female, age 72, unknown 242.5
2750 Male, age 76, both hemispheres 240.2
1828 Male, age 53, unknown 238.0
2047 Male, age 72, unknown 236.5
2016 Female, age 72, unknown 235.8
Inferior colliculus
nTPM: 240.1
2097 Female, age 72, unknown 242.6
2849 Male, age 72, unknown 239.5
1848 Female, age 42, unknown 239.2
1890 Male, age 53, unknown 239.2
Median raphe nucleus
nTPM: 238.5
2220 Male, age 76, midline 238.5
Pedunculopontine tegmental nucleus
nTPM: 242.9
2338 Male, age 61, both hemispheres 244.2
2334 Male, age 80, both hemispheres 243.5
1921 Female, age 85, both hemispheres 241.1
Periaquaductal grey, anterior
nTPM: 240.2
1947 Male, age 18, unknown 242.1
2502 Female, age 75, unknown 241.5
1795 Male, age 51, unknown 237.2
Periaquaductal grey, dorsal
nTPM: 239.6
2850 Male, age 76, both hemispheres 242.7
1840 Male, age 53, unknown 241.4
2464 Female, age 72, unknown 238.2
1831 Male, age 72, unknown 236.2
Periaquaductal grey, lateral
nTPM: 237.6
2140 Male, age 76, both hemispheres 238.2
2272 Male, age 74, both hemispheres 238.2
2053 Male, age 18, unknown 236.4
Pretectal area
nTPM: 238.8
1816 Male, age 51, unknown 243.5
1817 Female, age 42, unknown 243.4
2667 Female, age 75, unknown 240.2
1815 Male, age 53, unknown 240.0
2825 Male, age 18, unknown 239.5
2007 Male, age 72, unknown 239.3
1944 Female, age 72, unknown 238.5
2273 Male, age 74, both hemispheres 238.4
2224 Female, age 72, unknown 236.5
2316 Male, age 76, right hemisphere 236.3
2407 Male, age 75, both hemispheres 231.5
Red nucleus
nTPM: 239.8
1821 Female, age 72, unknown 249.5
2503 Female, age 72, unknown 243.1
1865 Male, age 51, unknown 242.1
2725 Female, age 75, unknown 240.8
1954 Female, age 42, unknown 240.6
2227 Male, age 72, unknown 239.6
1904 Male, age 53, unknown 238.8
2769 Male, age 72, unknown 238.7
2823 Male, age 76, right hemisphere 237.8
2785 Male, age 18, unknown 236.4
2584 Male, age 75, left hemisphere 235.5
2588 Male, age 74, left hemisphere 234.3
Substantia nigra
nTPM: 240.2
1916 Female, age 42, unknown 243.8
1889 Female, age 72, unknown 242.2
2409 Female, age 72, unknown 241.8
2699 Male, age 18, unknown 241.2
1851 Male, age 51, unknown 241.0
2241 Male, age 72, unknown 239.9
1941 Male, age 53, unknown 239.6
2665 Male, age 74, both hemispheres 239.1
2590 Female, age 75, unknown 237.3
2583 Male, age 75, right hemisphere 235.9
Superior colliculus
nTPM: 237.7
2587 Male, age 74, left hemisphere 243.9
1995 Male, age 72, unknown 239.8
1895 Male, age 76, right hemisphere 239.6
2261 Male, age 18, unknown 239.1
1913 Female, age 42, unknown 238.4
1796 Male, age 53, unknown 237.5
1839 Male, age 51, unknown 236.7
2668 Female, age 75, unknown 236.5
2087 Female, age 72, unknown 235.9
2664 Male, age 75, both hemispheres 229.9
Ventral tegmental area
nTPM: 240.9
2410 Female, age 72, unknown 247.5
2223 Female, age 72, unknown 242.1
1915 Female, age 42, unknown 241.5
2218 Male, age 76, both hemispheres 240.5
2021 Male, age 53, unknown 237.1
1942 Male, age 51, unknown 236.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 179.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 179.1
Samples: 139

Max nTPM: 339.3
Min nTPM: 121.2
Std nTPM: 38.3
Median nTPM: 170.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 339.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 322.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 279.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 268.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 268.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 266.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 263.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 261.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 254.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 242.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 239.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.0
FF:10158-103A5 76 years, female 95.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.9
Pig sample Sample description nTPM
Midbrain
nTPM: 8.5
Samples: 4

Max nTPM: 9.7
Min nTPM: 7.4
Sample A Female 9.7
Sample B Female 8.7
Sample C Male 7.4
Sample D Male 8.2
Periaqueductal gray
nTPM: 5.6
Samples: 3

Max nTPM: 6.1
Min nTPM: 5.2
Sample B Female 6.1
Sample C Male 5.6
Sample D Male 5.2
Substantia nigra
nTPM: 7.7
Samples: 4

Max nTPM: 10.7
Min nTPM: 6.2
Sample A Female 10.7
Sample B Female 6.8
Sample C Male 6.9
Sample D Male 6.2
Superior colliculi
nTPM: 8.9
Samples: 4

Max nTPM: 10.0
Min nTPM: 7.0
Sample A Female 10.0
Sample B Female 9.8
Sample C Male 7.0
Sample D Male 8.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 114.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.8
Samples: 4

Max nTPM: 134.6
Min nTPM: 96.9
Sample A Male 134.6
Sample B Male 104.9
Sample C Female 96.9
Sample D Female 122.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
678717 Antisense, RP_040914_02_G10, Mouse strain C57BL/6J (56 days, male) 2.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.