BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:6.9 nTPM
HPA:6.9 nTPM
GTEx:9.7 nTPM
FANTOM5:0.0 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 6.2
2289 Male, age 61, right hemisphere 7.8
2481 Female, age 94, left hemisphere 7.6
2290 Female, age 72, unknown 6.4
2288 Male, age 75, left hemisphere 6.0
1854 Male, age 80, left hemisphere 5.9
2846 Female, age 79, unknown 5.6
1781 Male, age 74, unknown 5.1
1857 Female, age 85, left hemisphere 5.0
Claustrum
nTPM: 4.9
2491 Male, age 75, both hemispheres 5.4
2568 Male, age 61, both hemispheres 5.4
2196 Female, age 79, unknown 5.2
2645 Female, age 72, unknown 5.2
2198 Male, age 80, both hemispheres 4.9
2284 Female, age 91, both hemispheres 4.8
2392 Female, age 94, both hemispheres 4.8
1956 Male, age 74, unknown 4.5
2292 Female, age 85, both hemispheres 4.2
Globus pallidus, externus
nTPM: 5.5
2772 Female, age 79, unknown 6.1
2646 Male, age 61, right hemisphere 5.9
2395 Male, age 75, both hemispheres 5.4
2567 Female, age 72, unknown 5.3
1996 Male, age 80, right hemisphere 4.8
Globus pallidus, internus
nTPM: 5.5
2483 Female, age 94, right hemisphere 6.6
1818 Male, age 74, unknown 6.1
2037 Male, age 80, right hemisphere 5.3
2778 Female, age 91, both hemispheres 5.2
2111 Female, age 85, right hemisphere 5.1
2287 Male, age 75, right hemisphere 5.1
2566 Female, age 72, unknown 4.7
Nucleus accumbens
nTPM: 5.5
2824 Male, age 61, right hemisphere 6.4
2286 Male, age 75, left hemisphere 6.2
2698 Female, age 72, unknown 5.5
2391 Female, age 94, left hemisphere 5.4
1783 Male, age 74, unknown 5.3
1806 Female, age 85, left hemisphere 5.1
1856 Female, age 91, right hemisphere 5.0
2732 Male, age 80, right hemisphere 4.9
Nucleus basalis of Meynert
nTPM: 6.9
2484 Female, age 94, left hemisphere 7.7
2569 Male, age 61, both hemispheres 7.4
2821 Male, age 75, both hemispheres 6.7
2393 Male, age 80, right hemisphere 5.8
Nucleus of the diagonal band
nTPM: 5.0
2029 Male, age 61, right hemisphere 5.3
1812 Female, age 91, both hemispheres 5.1
2195 Female, age 85, both hemispheres 5.1
2775 Male, age 80, right hemisphere 5.0
1979 Male, age 74, unknown 4.7
Olfactory tubercle
nTPM: 5.1
2856 Male, age 75, right hemisphere 5.3
1846 Male, age 80, right hemisphere 5.2
1998 Female, age 91, both hemispheres 5.0
2487 Female, age 94, left hemisphere 5.0
Putamen
nTPM: 5.8
2482 Female, age 94, left hemisphere 6.5
2647 Male, age 75, left hemisphere 6.4
1838 Male, age 80, right hemisphere 5.9
2466 Female, age 79, unknown 5.6
1937 Female, age 91, right hemisphere 5.5
1829 Male, age 74, unknown 5.4
2489 Female, age 72, unknown 5.0
Septal nuclei
nTPM: 4.9
2059 Female, age 85, both hemispheres 5.6
2009 Female, age 91, both hemispheres 5.4
2199 Male, age 80, right hemisphere 4.8
2394 Male, age 61, left hemisphere 4.8
2031 Female, age 72, unknown 4.7
2629 Female, age 94, right hemisphere 4.7
1960 Male, age 74, unknown 4.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.9
Samples: 246

Max nTPM: 44.9
Min nTPM: 0.8
Std nTPM: 6.4
Median nTPM: 7.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 44.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 34.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 30.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 29.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 28.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 26.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 25.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 23.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 23.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 22.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 21.5
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.3
Samples: 246

Max nTPM: 49.6
Min nTPM: 0.3
Std nTPM: 5.8
Median nTPM: 5.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 49.6
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 31.6
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 26.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 23.0
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 22.9
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 22.8
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 21.0
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 20.3
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 19.2
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 19.2
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 19.1
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 9.7
Samples: 205

Max nTPM: 41.9
Min nTPM: 0.2
Std nTPM: 7.0
Median nTPM: 7.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 41.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 33.8
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 32.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 31.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 29.7
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 28.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 27.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 26.8
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 25.9
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 25.8
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 24.2
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.