MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:83.1 nTPM
HPA:83.1 nTPM
GTEx:105.5 nTPM
FANTOM5:9.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 83.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.4
2219 Male, age 76, both hemispheres 89.2
2019 Male, age 18, unknown 69.1
2828 Female, age 72, unknown 67.5
1827 Male, age 72, unknown 66.3
2586 Male, age 75, left hemisphere 64.0
1870 Female, age 42, unknown 56.9
2411 Female, age 72, unknown 56.2
1833 Male, age 53, unknown 56.1
1830 Male, age 51, unknown 54.6
2666 Male, age 74, left hemisphere 54.4
Dorsal raphe nucleus
nTPM: 61.4
2047 Male, age 72, unknown 67.4
2298 Female, age 72, unknown 66.4
2750 Male, age 76, both hemispheres 65.8
1828 Male, age 53, unknown 61.1
2016 Female, age 72, unknown 46.4
Inferior colliculus
nTPM: 62.4
2849 Male, age 72, unknown 71.2
1848 Female, age 42, unknown 68.0
1890 Male, age 53, unknown 56.1
2097 Female, age 72, unknown 54.2
Median raphe nucleus
nTPM: 73.6
2220 Male, age 76, midline 73.6
Pedunculopontine tegmental nucleus
nTPM: 61.0
1921 Female, age 85, both hemispheres 66.6
2334 Male, age 80, both hemispheres 66.1
2338 Male, age 61, both hemispheres 50.2
Periaquaductal grey, anterior
nTPM: 60.7
2502 Female, age 75, unknown 71.9
1795 Male, age 51, unknown 66.1
1947 Male, age 18, unknown 44.0
Periaquaductal grey, dorsal
nTPM: 64.9
1840 Male, age 53, unknown 69.8
2464 Female, age 72, unknown 65.4
2850 Male, age 76, both hemispheres 64.6
1831 Male, age 72, unknown 59.8
Periaquaductal grey, lateral
nTPM: 53.4
2140 Male, age 76, both hemispheres 58.4
2053 Male, age 18, unknown 51.0
2272 Male, age 74, both hemispheres 50.6
Pretectal area
nTPM: 83.1
1944 Female, age 72, unknown 123.7
1816 Male, age 51, unknown 112.5
2667 Female, age 75, unknown 108.3
2007 Male, age 72, unknown 104.4
1815 Male, age 53, unknown 100.7
1817 Female, age 42, unknown 96.4
2224 Female, age 72, unknown 60.6
2825 Male, age 18, unknown 54.7
2407 Male, age 75, both hemispheres 54.6
2316 Male, age 76, right hemisphere 51.2
2273 Male, age 74, both hemispheres 46.8
Red nucleus
nTPM: 46.2
2785 Male, age 18, unknown 77.6
2588 Male, age 74, left hemisphere 58.8
2584 Male, age 75, left hemisphere 52.5
2503 Female, age 72, unknown 42.6
2769 Male, age 72, unknown 41.6
2725 Female, age 75, unknown 41.4
1904 Male, age 53, unknown 40.5
2227 Male, age 72, unknown 40.4
2823 Male, age 76, right hemisphere 40.2
1954 Female, age 42, unknown 39.8
1821 Female, age 72, unknown 39.5
1865 Male, age 51, unknown 39.0
Substantia nigra
nTPM: 72.1
2665 Male, age 74, both hemispheres 108.3
1889 Female, age 72, unknown 86.3
1851 Male, age 51, unknown 85.1
1941 Male, age 53, unknown 76.8
2409 Female, age 72, unknown 71.1
2699 Male, age 18, unknown 65.5
1916 Female, age 42, unknown 64.5
2583 Male, age 75, right hemisphere 57.1
2241 Male, age 72, unknown 55.2
2590 Female, age 75, unknown 51.6
Superior colliculus
nTPM: 68.9
2087 Female, age 72, unknown 94.8
1895 Male, age 76, right hemisphere 75.4
1796 Male, age 53, unknown 74.7
1913 Female, age 42, unknown 73.5
2261 Male, age 18, unknown 66.6
1995 Male, age 72, unknown 65.8
2668 Female, age 75, unknown 61.0
2664 Male, age 75, both hemispheres 60.5
1839 Male, age 51, unknown 59.5
2587 Male, age 74, left hemisphere 56.9
Ventral tegmental area
nTPM: 65.9
2218 Male, age 76, both hemispheres 83.4
2223 Female, age 72, unknown 68.0
1915 Female, age 42, unknown 66.9
2410 Female, age 72, unknown 63.5
1942 Male, age 51, unknown 57.8
2021 Male, age 53, unknown 55.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 105.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 105.5
Samples: 139

Max nTPM: 339.5
Min nTPM: 17.4
Std nTPM: 61.9
Median nTPM: 95.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 339.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 315.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 291.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 259.0
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 230.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 223.5
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 211.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 208.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 202.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 200.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 196.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.3
FF:10158-103A5 76 years, female 9.3

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The Human Protein Atlas

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