BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:3.2 nTPM
HPA:3.2 nTPM
GTEx:4.5 nTPM
FANTOM5:11.3 Scaled Tags Per Million
Pig:1.1 nTPM
Mouse:4.9 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA031123
Glial cells Not detected
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.2
1857 Female, age 85, left hemisphere 4.6
1854 Male, age 80, left hemisphere 3.8
2290 Female, age 72, unknown 3.7
2846 Female, age 79, unknown 3.3
2288 Male, age 75, left hemisphere 2.9
2289 Male, age 61, right hemisphere 2.9
1781 Male, age 74, unknown 2.5
2481 Female, age 94, left hemisphere 1.5
Claustrum
nTPM: 1.0
2284 Female, age 91, both hemispheres 1.4
2568 Male, age 61, both hemispheres 1.3
2392 Female, age 94, both hemispheres 1.2
2645 Female, age 72, unknown 1.2
2196 Female, age 79, unknown 1.1
2491 Male, age 75, both hemispheres 0.9
2292 Female, age 85, both hemispheres 0.7
2198 Male, age 80, both hemispheres 0.6
1956 Male, age 74, unknown 0.5
Globus pallidus, externus
nTPM: 1.2
2567 Female, age 72, unknown 1.9
2772 Female, age 79, unknown 1.2
1996 Male, age 80, right hemisphere 1.0
2395 Male, age 75, both hemispheres 1.0
2646 Male, age 61, right hemisphere 0.8
Globus pallidus, internus
nTPM: 1.0
2483 Female, age 94, right hemisphere 1.5
1818 Male, age 74, unknown 1.1
2037 Male, age 80, right hemisphere 1.0
2111 Female, age 85, right hemisphere 0.9
2287 Male, age 75, right hemisphere 0.8
2566 Female, age 72, unknown 0.7
2778 Female, age 91, both hemispheres 0.6
Nucleus accumbens
nTPM: 3.2
1806 Female, age 85, left hemisphere 4.3
1783 Male, age 74, unknown 3.8
2824 Male, age 61, right hemisphere 3.7
1856 Female, age 91, right hemisphere 3.6
2698 Female, age 72, unknown 3.3
2286 Male, age 75, left hemisphere 3.0
2732 Male, age 80, right hemisphere 2.3
2391 Female, age 94, left hemisphere 1.6
Nucleus basalis of Meynert
nTPM: 2.4
2393 Male, age 80, right hemisphere 4.2
2484 Female, age 94, left hemisphere 2.4
2821 Male, age 75, both hemispheres 1.6
2569 Male, age 61, both hemispheres 1.4
Nucleus of the diagonal band
nTPM: 2.3
2029 Male, age 61, right hemisphere 2.6
2195 Female, age 85, both hemispheres 2.5
1979 Male, age 74, unknown 2.3
1812 Female, age 91, both hemispheres 2.1
2775 Male, age 80, right hemisphere 1.8
Olfactory tubercle
nTPM: 2.0
2487 Female, age 94, left hemisphere 2.1
2856 Male, age 75, right hemisphere 2.1
1846 Male, age 80, right hemisphere 1.8
1998 Female, age 91, both hemispheres 1.8
Putamen
nTPM: 3.0
1838 Male, age 80, right hemisphere 4.5
2466 Female, age 79, unknown 3.4
1937 Female, age 91, right hemisphere 3.2
1829 Male, age 74, unknown 2.9
2489 Female, age 72, unknown 2.7
2647 Male, age 75, left hemisphere 2.3
2482 Female, age 94, left hemisphere 2.1
Septal nuclei
nTPM: 2.0
1960 Male, age 74, unknown 2.4
2009 Female, age 91, both hemispheres 2.4
2059 Female, age 85, both hemispheres 2.2
2394 Male, age 61, left hemisphere 2.0
2629 Female, age 94, right hemisphere 1.9
2031 Female, age 72, unknown 1.7
2199 Male, age 80, right hemisphere 1.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.9
Samples: 246

Max nTPM: 5.5
Min nTPM: 0.5
Std nTPM: 0.9
Median nTPM: 2.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 5.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 5.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 5.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 4.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 4.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 4.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 4.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 4.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 4.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 4.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 4.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.5
Samples: 246

Max nTPM: 9.7
Min nTPM: 0.0
Std nTPM: 1.7
Median nTPM: 4.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 9.7
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 9.2
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 9.0
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 8.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 8.5
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 8.3
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 8.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 8.1
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 8.1
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 7.7
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 7.7
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Brain - Putamen (basal ganglia)
Average nTPM: 2.8
Samples: 205

Max nTPM: 7.1
Min nTPM: 0.6
Std nTPM: 1.1
Median nTPM: 2.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 7.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 5.7
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 5.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 5.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 5.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 4.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 4.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 4.9
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 4.8
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 4.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 4.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 8.4
FF:10164-103B2 76 years, female 8.4
Globus pallidus
Scaled Tags Per Million: 1.8
FF:10175-103C4 60 years, female 3.1
FF:10161-103A8 76 years, female 0.5
Nucleus accumbens
Scaled Tags Per Million: 4.4
FF:10037-101F1 23-56 years, mixed 4.4
Putamen
Scaled Tags Per Million: 11.3
FF:10176-103C5 60 years, female 11.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.1
Pig sample Sample description nTPM
Caudate
nTPM: 1.0
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 1.1
Sample C Male 1.2
Sample D Male 1.1
Putamen
nTPM: 1.1
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 1.3
Sample C Male 1.5
Sample D Male 1.2
Septum
nTPM: 0.4
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.4
Sample C Male 0.2
Sample D Male 0.9
Ventral pallidum
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 0.8
Sample C Male 0.3
Sample D Male 0.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.8
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.5
Sample A Male 1.3
Sample B Male 0.9
Sample C Female 0.5
Sample D Female 0.5
Septum
nTPM: 4.9
Samples: 4

Max nTPM: 7.0
Min nTPM: 2.3
Sample A Male 2.3
Sample B Male 7.0
Sample C Female 5.2
Sample D Female 5.2
Ventral forebrain
nTPM: 0.9
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.6
Sample A Male 1.0
Sample B Male 0.6
Sample C Female 1.0
Sample D Female 1.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
1837 Antisense, RP_040507_02_G11, Mouse strain C57BL/6J (56 days, male) 0.1
1836 Antisense, RP_040507_02_G11, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
1837 Antisense, RP_040507_02_G11, Mouse strain C57BL/6J (56 days, male) 0.1
1836 Antisense, RP_040507_02_G11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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