MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:31.4 nTPM
HPA:31.4 nTPM
GTEx:47.8 nTPM
FANTOM5:137.0 Scaled Tags Per Million
Pig:16.2 nTPM
Mouse:31.9 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.9
1870 Female, age 42, unknown 31.3
1830 Male, age 51, unknown 29.8
1833 Male, age 53, unknown 29.5
2019 Male, age 18, unknown 29.0
2411 Female, age 72, unknown 28.8
1827 Male, age 72, unknown 28.6
2586 Male, age 75, left hemisphere 28.3
2828 Female, age 72, unknown 28.1
2219 Male, age 76, both hemispheres 27.8
2666 Male, age 74, left hemisphere 27.7
Dorsal raphe nucleus
nTPM: 29.0
2750 Male, age 76, both hemispheres 29.9
1828 Male, age 53, unknown 29.4
2016 Female, age 72, unknown 29.1
2047 Male, age 72, unknown 28.8
2298 Female, age 72, unknown 27.9
Inferior colliculus
nTPM: 29.5
1890 Male, age 53, unknown 30.1
1848 Female, age 42, unknown 30.0
2849 Male, age 72, unknown 29.1
2097 Female, age 72, unknown 29.0
Median raphe nucleus
nTPM: 31.4
2220 Male, age 76, midline 31.4
Pedunculopontine tegmental nucleus
nTPM: 30.9
2338 Male, age 61, both hemispheres 31.4
1921 Female, age 85, both hemispheres 30.8
2334 Male, age 80, both hemispheres 30.5
Periaquaductal grey, anterior
nTPM: 28.2
1947 Male, age 18, unknown 29.3
2502 Female, age 75, unknown 27.8
1795 Male, age 51, unknown 27.5
Periaquaductal grey, dorsal
nTPM: 28.9
2850 Male, age 76, both hemispheres 30.4
1840 Male, age 53, unknown 29.1
2464 Female, age 72, unknown 28.1
1831 Male, age 72, unknown 28.0
Periaquaductal grey, lateral
nTPM: 27.9
2140 Male, age 76, both hemispheres 28.5
2053 Male, age 18, unknown 27.7
2272 Male, age 74, both hemispheres 27.6
Pretectal area
nTPM: 29.4
1944 Female, age 72, unknown 31.0
2667 Female, age 75, unknown 30.7
1817 Female, age 42, unknown 30.5
1815 Male, age 53, unknown 29.7
2007 Male, age 72, unknown 29.5
1816 Male, age 51, unknown 29.4
2407 Male, age 75, both hemispheres 29.2
2825 Male, age 18, unknown 28.9
2224 Female, age 72, unknown 28.8
2273 Male, age 74, both hemispheres 28.5
2316 Male, age 76, right hemisphere 27.7
Red nucleus
nTPM: 29.9
1821 Female, age 72, unknown 31.9
1954 Female, age 42, unknown 31.1
1865 Male, age 51, unknown 31.0
1904 Male, age 53, unknown 30.5
2503 Female, age 72, unknown 30.5
2725 Female, age 75, unknown 30.2
2823 Male, age 76, right hemisphere 30.1
2769 Male, age 72, unknown 30.0
2227 Male, age 72, unknown 29.8
2785 Male, age 18, unknown 29.5
2584 Male, age 75, left hemisphere 27.3
2588 Male, age 74, left hemisphere 27.2
Substantia nigra
nTPM: 29.7
1916 Female, age 42, unknown 31.5
2241 Male, age 72, unknown 31.3
1889 Female, age 72, unknown 31.1
2409 Female, age 72, unknown 30.8
2699 Male, age 18, unknown 30.5
1851 Male, age 51, unknown 29.7
1941 Male, age 53, unknown 29.2
2583 Male, age 75, right hemisphere 28.4
2665 Male, age 74, both hemispheres 27.4
2590 Female, age 75, unknown 27.3
Superior colliculus
nTPM: 28.9
1913 Female, age 42, unknown 30.3
2668 Female, age 75, unknown 30.3
1895 Male, age 76, right hemisphere 29.9
1995 Male, age 72, unknown 29.2
1796 Male, age 53, unknown 28.6
2587 Male, age 74, left hemisphere 28.5
2087 Female, age 72, unknown 28.3
2664 Male, age 75, both hemispheres 28.3
1839 Male, age 51, unknown 27.9
2261 Male, age 18, unknown 27.9
Ventral tegmental area
nTPM: 28.9
2223 Female, age 72, unknown 30.8
2218 Male, age 76, both hemispheres 29.6
1915 Female, age 42, unknown 29.1
1942 Male, age 51, unknown 28.7
2410 Female, age 72, unknown 28.4
2021 Male, age 53, unknown 27.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.8
Samples: 139

Max nTPM: 99.3
Min nTPM: 30.4
Std nTPM: 8.6
Median nTPM: 46.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 99.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 72.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 68.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 67.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 67.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 66.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 66.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 61.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 60.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 60.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 59.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 137.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 137.0
FF:10158-103A5 76 years, female 137.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.2
Pig sample Sample description nTPM
Midbrain
nTPM: 16.2
Samples: 4

Max nTPM: 18.2
Min nTPM: 15.1
Sample A Female 18.2
Sample B Female 15.6
Sample C Male 15.1
Sample D Male 15.9
Periaqueductal gray
nTPM: 15.0
Samples: 3

Max nTPM: 15.3
Min nTPM: 14.4
Sample B Female 15.3
Sample C Male 14.4
Sample D Male 15.3
Substantia nigra
nTPM: 15.3
Samples: 4

Max nTPM: 15.9
Min nTPM: 15.0
Sample A Female 15.9
Sample B Female 15.1
Sample C Male 15.3
Sample D Male 15.0
Superior colliculi
nTPM: 14.9
Samples: 4

Max nTPM: 15.4
Min nTPM: 14.4
Sample A Female 14.6
Sample B Female 14.4
Sample C Male 15.4
Sample D Male 15.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.9
Samples: 4

Max nTPM: 33.9
Min nTPM: 29.5
Sample A Male 33.5
Sample B Male 30.7
Sample C Female 29.5
Sample D Female 33.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69782306 Antisense, RP_050505_02_G01, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.