BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:58.1 nTPM
HPA:58.1 nTPM
GTEx:53.2 nTPM
FANTOM5:94.5 Scaled Tags Per Million
Pig:35.9 nTPM
Mouse:115.4 nTPM
Allen mouse:1.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 58.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.5
1781 Male, age 74, unknown 41.1
2481 Female, age 94, left hemisphere 39.8
2288 Male, age 75, left hemisphere 37.8
1857 Female, age 85, left hemisphere 36.6
2290 Female, age 72, unknown 36.0
2846 Female, age 79, unknown 34.2
1854 Male, age 80, left hemisphere 33.7
2289 Male, age 61, right hemisphere 33.1
Claustrum
nTPM: 32.9
2491 Male, age 75, both hemispheres 37.8
1956 Male, age 74, unknown 34.1
2568 Male, age 61, both hemispheres 33.5
2198 Male, age 80, both hemispheres 33.1
2196 Female, age 79, unknown 32.9
2392 Female, age 94, both hemispheres 32.6
2645 Female, age 72, unknown 32.2
2284 Female, age 91, both hemispheres 31.7
2292 Female, age 85, both hemispheres 28.0
Globus pallidus, externus
nTPM: 48.4
2567 Female, age 72, unknown 57.0
2646 Male, age 61, right hemisphere 50.2
2395 Male, age 75, both hemispheres 46.9
1996 Male, age 80, right hemisphere 45.3
2772 Female, age 79, unknown 42.6
Globus pallidus, internus
nTPM: 44.1
2483 Female, age 94, right hemisphere 52.7
2287 Male, age 75, right hemisphere 51.3
2566 Female, age 72, unknown 45.9
2778 Female, age 91, both hemispheres 44.3
2037 Male, age 80, right hemisphere 38.9
1818 Male, age 74, unknown 38.4
2111 Female, age 85, right hemisphere 37.6
Nucleus accumbens
nTPM: 37.3
2732 Male, age 80, right hemisphere 41.6
2824 Male, age 61, right hemisphere 40.7
2286 Male, age 75, left hemisphere 36.7
2391 Female, age 94, left hemisphere 36.6
1783 Male, age 74, unknown 36.5
1806 Female, age 85, left hemisphere 35.7
2698 Female, age 72, unknown 35.7
1856 Female, age 91, right hemisphere 35.1
Nucleus basalis of Meynert
nTPM: 40.7
2569 Male, age 61, both hemispheres 53.1
2484 Female, age 94, left hemisphere 39.6
2393 Male, age 80, right hemisphere 35.8
2821 Male, age 75, both hemispheres 34.5
Nucleus of the diagonal band
nTPM: 58.1
2029 Male, age 61, right hemisphere 67.2
2195 Female, age 85, both hemispheres 64.1
2775 Male, age 80, right hemisphere 60.6
1812 Female, age 91, both hemispheres 56.7
1979 Male, age 74, unknown 42.0
Olfactory tubercle
nTPM: 45.6
1846 Male, age 80, right hemisphere 54.4
2487 Female, age 94, left hemisphere 49.0
2856 Male, age 75, right hemisphere 39.6
1998 Female, age 91, both hemispheres 39.2
Putamen
nTPM: 37.5
2647 Male, age 75, left hemisphere 46.7
2489 Female, age 72, unknown 37.7
1829 Male, age 74, unknown 37.2
2482 Female, age 94, left hemisphere 36.5
2466 Female, age 79, unknown 35.8
1937 Female, age 91, right hemisphere 34.7
1838 Male, age 80, right hemisphere 34.1
Septal nuclei
nTPM: 49.7
2031 Female, age 72, unknown 56.5
2059 Female, age 85, both hemispheres 56.4
2009 Female, age 91, both hemispheres 51.3
2629 Female, age 94, right hemisphere 50.1
1960 Male, age 74, unknown 50.0
2199 Male, age 80, right hemisphere 41.9
2394 Male, age 61, left hemisphere 41.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 53.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 48.1
Samples: 246

Max nTPM: 92.6
Min nTPM: 23.9
Std nTPM: 11.7
Median nTPM: 46.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 92.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 89.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 88.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 86.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 84.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 82.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 80.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 77.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 75.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 74.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 74.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 51.8
Samples: 246

Max nTPM: 107.0
Min nTPM: 9.6
Std nTPM: 13.4
Median nTPM: 51.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 107.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 100.3
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 91.6
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 88.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 88.1
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 87.5
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 85.5
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 85.5
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 80.4
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 78.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 76.0
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 53.2
Samples: 205

Max nTPM: 106.3
Min nTPM: 26.4
Std nTPM: 14.2
Median nTPM: 50.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 106.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 99.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 96.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 95.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 93.5
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 84.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 84.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 84.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 82.2
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 82.1
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 80.4
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 51.5
FF:10164-103B2 76 years, female 51.5
Globus pallidus
Scaled Tags Per Million: 94.5
FF:10175-103C4 60 years, female 137.3
FF:10161-103A8 76 years, female 51.6
Nucleus accumbens
Scaled Tags Per Million: 93.2
FF:10037-101F1 23-56 years, mixed 93.2
Putamen
Scaled Tags Per Million: 61.1
FF:10176-103C5 60 years, female 61.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 35.9
Pig sample Sample description nTPM
Caudate
nTPM: 24.4
Samples: 4

Max nTPM: 28.6
Min nTPM: 20.0
Sample A Female 22.7
Sample B Female 28.6
Sample C Male 26.4
Sample D Male 20.0
Putamen
nTPM: 18.1
Samples: 4

Max nTPM: 21.3
Min nTPM: 16.3
Sample A Female 21.3
Sample B Female 16.3
Sample C Male 18.0
Sample D Male 16.7
Septum
nTPM: 35.9
Samples: 4

Max nTPM: 44.7
Min nTPM: 28.7
Sample A Female 44.7
Sample B Female 38.5
Sample C Male 31.8
Sample D Male 28.7
Ventral pallidum
nTPM: 29.2
Samples: 4

Max nTPM: 38.5
Min nTPM: 22.7
Sample A Female 31.5
Sample B Female 22.7
Sample C Male 38.5
Sample D Male 24.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 115.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 115.4
Samples: 4

Max nTPM: 125.5
Min nTPM: 106.7
Sample A Male 111.2
Sample B Male 106.7
Sample C Female 118.3
Sample D Female 125.5
Septum
nTPM: 68.1
Samples: 4

Max nTPM: 72.9
Min nTPM: 64.0
Sample A Male 72.9
Sample B Male 65.0
Sample C Female 64.0
Sample D Female 70.3
Ventral forebrain
nTPM: 103.3
Samples: 4

Max nTPM: 112.3
Min nTPM: 97.7
Sample A Male 100.9
Sample B Male 97.7
Sample C Female 112.3
Sample D Female 102.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.5
70795509 Antisense, RP_050712_01_F12, Mouse strain C57BL/6J (56 days, male) 1.5
Pallidum
Expression energy: 1.2
70795509 Antisense, RP_050712_01_F12, Mouse strain C57BL/6J (56 days, male) 1.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.