MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:510.0 nTPM
HPA:510.0 nTPM
GTEx:478.4 nTPM
FANTOM5:75.5 Scaled Tags Per Million
Pig:131.4 nTPM
Mouse:115.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 510.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 487.2
1870 Female, age 42, unknown 505.4
1833 Male, age 53, unknown 492.3
1830 Male, age 51, unknown 490.0
2219 Male, age 76, both hemispheres 489.3
2411 Female, age 72, unknown 487.8
1827 Male, age 72, unknown 487.5
2666 Male, age 74, left hemisphere 484.5
2019 Male, age 18, unknown 482.9
2828 Female, age 72, unknown 482.0
2586 Male, age 75, left hemisphere 470.8
Dorsal raphe nucleus
nTPM: 492.9
2750 Male, age 76, both hemispheres 497.7
2016 Female, age 72, unknown 493.2
2047 Male, age 72, unknown 492.2
1828 Male, age 53, unknown 491.5
2298 Female, age 72, unknown 489.9
Inferior colliculus
nTPM: 499.1
2849 Male, age 72, unknown 505.3
2097 Female, age 72, unknown 500.2
1848 Female, age 42, unknown 497.4
1890 Male, age 53, unknown 493.3
Median raphe nucleus
nTPM: 500.6
2220 Male, age 76, midline 500.6
Pedunculopontine tegmental nucleus
nTPM: 510.0
2338 Male, age 61, both hemispheres 517.2
2334 Male, age 80, both hemispheres 510.1
1921 Female, age 85, both hemispheres 502.7
Periaquaductal grey, anterior
nTPM: 489.6
1947 Male, age 18, unknown 491.6
2502 Female, age 75, unknown 491.1
1795 Male, age 51, unknown 485.9
Periaquaductal grey, dorsal
nTPM: 495.5
2850 Male, age 76, both hemispheres 506.5
1840 Male, age 53, unknown 500.7
1831 Male, age 72, unknown 488.6
2464 Female, age 72, unknown 486.1
Periaquaductal grey, lateral
nTPM: 489.1
2053 Male, age 18, unknown 493.6
2140 Male, age 76, both hemispheres 493.3
2272 Male, age 74, both hemispheres 480.3
Pretectal area
nTPM: 493.5
2224 Female, age 72, unknown 502.3
2667 Female, age 75, unknown 501.8
1817 Female, age 42, unknown 497.0
2407 Male, age 75, both hemispheres 496.6
2825 Male, age 18, unknown 496.0
1944 Female, age 72, unknown 493.4
1815 Male, age 53, unknown 490.7
1816 Male, age 51, unknown 490.2
2273 Male, age 74, both hemispheres 487.7
2007 Male, age 72, unknown 487.3
2316 Male, age 76, right hemisphere 485.2
Red nucleus
nTPM: 494.7
1821 Female, age 72, unknown 504.8
2725 Female, age 75, unknown 503.6
1865 Male, age 51, unknown 500.8
2227 Male, age 72, unknown 498.9
2503 Female, age 72, unknown 498.4
1954 Female, age 42, unknown 498.2
1904 Male, age 53, unknown 494.6
2769 Male, age 72, unknown 494.4
2823 Male, age 76, right hemisphere 492.0
2584 Male, age 75, left hemisphere 485.4
2588 Male, age 74, left hemisphere 483.4
2785 Male, age 18, unknown 481.7
Substantia nigra
nTPM: 495.3
2699 Male, age 18, unknown 510.6
2665 Male, age 74, both hemispheres 502.7
1889 Female, age 72, unknown 502.5
1916 Female, age 42, unknown 502.2
1851 Male, age 51, unknown 495.9
1941 Male, age 53, unknown 494.9
2241 Male, age 72, unknown 494.8
2590 Female, age 75, unknown 486.5
2409 Female, age 72, unknown 482.0
2583 Male, age 75, right hemisphere 480.9
Superior colliculus
nTPM: 490.7
1895 Male, age 76, right hemisphere 503.1
2587 Male, age 74, left hemisphere 500.3
1913 Female, age 42, unknown 495.2
1839 Male, age 51, unknown 492.8
1995 Male, age 72, unknown 492.4
1796 Male, age 53, unknown 488.0
2087 Female, age 72, unknown 485.2
2261 Male, age 18, unknown 484.9
2664 Male, age 75, both hemispheres 483.7
2668 Female, age 75, unknown 481.6
Ventral tegmental area
nTPM: 495.6
2223 Female, age 72, unknown 504.8
1915 Female, age 42, unknown 500.9
2021 Male, age 53, unknown 495.3
2218 Male, age 76, both hemispheres 494.4
2410 Female, age 72, unknown 489.3
1942 Male, age 51, unknown 488.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 478.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 478.4
Samples: 139

Max nTPM: 1019.1
Min nTPM: 264.3
Std nTPM: 129.6
Median nTPM: 459.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1019.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 919.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 898.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 825.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 795.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 751.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 727.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 709.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 674.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 630.6
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 628.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.5
FF:10158-103A5 76 years, female 75.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 131.4
Pig sample Sample description nTPM
Midbrain
nTPM: 118.2
Samples: 4

Max nTPM: 132.8
Min nTPM: 105.1
Sample A Female 132.8
Sample B Female 126.1
Sample C Male 105.1
Sample D Male 108.7
Periaqueductal gray
nTPM: 115.7
Samples: 3

Max nTPM: 128.1
Min nTPM: 107.0
Sample B Female 107.0
Sample C Male 128.1
Sample D Male 112.1
Substantia nigra
nTPM: 131.4
Samples: 4

Max nTPM: 168.4
Min nTPM: 97.7
Sample A Female 168.4
Sample B Female 132.7
Sample C Male 126.7
Sample D Male 97.7
Superior colliculi
nTPM: 123.6
Samples: 4

Max nTPM: 162.1
Min nTPM: 92.9
Sample A Female 162.1
Sample B Female 92.9
Sample C Male 132.5
Sample D Male 106.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 115.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 115.4
Samples: 4

Max nTPM: 126.0
Min nTPM: 98.9
Sample A Male 126.0
Sample B Male 117.6
Sample C Female 98.9
Sample D Female 119.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71763951 Antisense, RP_050921_02_H07, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.