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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:513.0 nTPM
HPA:513.0 nTPM
GTEx:436.5 nTPM
FANTOM5:87.4 Scaled Tags Per Million
Pig:127.9 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 513.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 501.0
1981 Female, age 72, midline 520.0
2048 Male, age 55, midline 505.3
2565 Male, age 75, midline 497.9
2816 Male, age 47, midline 491.3
2194 Female, age 79, both hemispheres 490.6
Cervical spinal cord, dorsal horn
nTPM: 513.0
2173 Female, age 72, unknown 521.7
2296 Male, age 66, both hemispheres 519.1
1877 Male, age 55, unknown 512.6
2069 Male, age 47, both hemispheres 511.6
2721 Male, age 90, both hemispheres 509.1
2297 Male, age 75, both hemispheres 503.8
Cervical spinal cord, ventral horn
nTPM: 505.1
2098 Female, age 72, unknown 511.6
2068 Male, age 55, unknown 510.5
2480 Male, age 75, both hemispheres 508.6
2809 Male, age 90, both hemispheres 503.4
2295 Male, age 66, both hemispheres 502.2
2820 Female, age 79, both hemispheres 494.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 436.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 436.5
Samples: 159

Max nTPM: 770.9
Min nTPM: 166.2
Std nTPM: 111.1
Median nTPM: 422.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 770.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 768.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 719.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 689.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 685.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 682.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 667.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 648.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 648.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 639.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 634.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 633.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 618.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 612.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 593.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 592.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 589.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 583.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 577.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 574.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 560.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 558.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 557.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 557.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 556.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 551.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 549.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 544.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 539.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 536.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 535.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 535.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 524.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 522.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 518.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 510.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 506.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 501.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 498.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 498.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 497.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 497.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 494.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 482.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 477.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 476.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 472.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 471.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 470.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 467.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 466.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 465.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 459.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 456.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 456.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 456.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 453.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 453.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 452.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 450.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 449.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 449.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 446.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 445.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 445.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 444.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 444.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 441.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 439.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 438.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 437.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 433.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 432.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 430.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 429.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 428.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 428.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 426.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 426.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 422.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 421.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 420.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 419.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 418.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 418.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 416.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 414.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 408.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 405.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 405.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 403.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 398.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 397.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 396.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 395.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 394.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 394.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 392.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 392.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 392.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 392.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 389.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 386.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 385.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 383.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 379.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 378.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 377.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 374.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 373.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 373.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 372.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 369.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 367.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 366.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 365.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 365.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 362.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 361.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 361.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 360.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 360.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 360.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 355.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 354.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 352.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 351.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 351.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 349.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 344.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 342.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 338.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 337.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 335.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 331.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 331.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 328.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 327.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 323.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 315.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 313.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 311.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 310.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 309.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 307.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 306.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 306.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 304.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 299.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 286.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 280.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 261.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 261.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 260.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 254.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 250.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 242.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 217.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 166.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 87.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 87.4
FF:10181-103D1 60 years, female 120.4
FF:10159-103A6 76 years, female 54.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 127.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 127.8
Samples: 4

Max nTPM: 147.5
Min nTPM: 108.1
Sample A Female 119.8
Sample B Female 135.6
Sample C Male 147.5
Sample D Male 108.1
Ventral spinal cord
nTPM: 128.0
Samples: 4

Max nTPM: 140.0
Min nTPM: 107.6
Sample A Female 107.6
Sample B Female 138.9
Sample C Male 140.0
Sample D Male 125.3

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