MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.5 nTPM
HPA:16.5 nTPM
GTEx:23.7 nTPM
FANTOM5:58.6 Scaled Tags Per Million
Pig:8.2 nTPM
Mouse:0.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.0
1830 Male, age 51, unknown 16.4
2019 Male, age 18, unknown 16.0
1833 Male, age 53, unknown 15.6
2411 Female, age 72, unknown 15.3
2828 Female, age 72, unknown 15.3
1827 Male, age 72, unknown 15.1
1870 Female, age 42, unknown 15.0
2666 Male, age 74, left hemisphere 14.8
2219 Male, age 76, both hemispheres 14.2
2586 Male, age 75, left hemisphere 12.8
Dorsal raphe nucleus
nTPM: 13.8
2750 Male, age 76, both hemispheres 15.6
1828 Male, age 53, unknown 14.0
2047 Male, age 72, unknown 13.6
2016 Female, age 72, unknown 13.2
2298 Female, age 72, unknown 12.5
Inferior colliculus
nTPM: 14.5
2849 Male, age 72, unknown 15.4
1848 Female, age 42, unknown 14.5
1890 Male, age 53, unknown 14.4
2097 Female, age 72, unknown 13.9
Median raphe nucleus
nTPM: 14.5
2220 Male, age 76, midline 14.5
Pedunculopontine tegmental nucleus
nTPM: 14.9
1921 Female, age 85, both hemispheres 15.5
2334 Male, age 80, both hemispheres 14.8
2338 Male, age 61, both hemispheres 14.5
Periaquaductal grey, anterior
nTPM: 13.7
2502 Female, age 75, unknown 15.0
1947 Male, age 18, unknown 13.3
1795 Male, age 51, unknown 12.8
Periaquaductal grey, dorsal
nTPM: 13.6
2464 Female, age 72, unknown 15.0
1831 Male, age 72, unknown 14.1
1840 Male, age 53, unknown 12.8
2850 Male, age 76, both hemispheres 12.4
Periaquaductal grey, lateral
nTPM: 14.7
2053 Male, age 18, unknown 15.1
2140 Male, age 76, both hemispheres 14.5
2272 Male, age 74, both hemispheres 14.5
Pretectal area
nTPM: 15.1
2667 Female, age 75, unknown 17.3
2407 Male, age 75, both hemispheres 15.9
2316 Male, age 76, right hemisphere 15.5
1815 Male, age 53, unknown 15.4
1816 Male, age 51, unknown 15.4
2007 Male, age 72, unknown 15.2
1817 Female, age 42, unknown 15.1
2273 Male, age 74, both hemispheres 14.9
2825 Male, age 18, unknown 14.3
1944 Female, age 72, unknown 14.1
2224 Female, age 72, unknown 13.3
Red nucleus
nTPM: 16.5
2823 Male, age 76, right hemisphere 18.8
2588 Male, age 74, left hemisphere 18.4
2584 Male, age 75, left hemisphere 17.1
2785 Male, age 18, unknown 17.1
1865 Male, age 51, unknown 16.4
1821 Female, age 72, unknown 16.2
2769 Male, age 72, unknown 16.1
2227 Male, age 72, unknown 16.0
1904 Male, age 53, unknown 15.9
2725 Female, age 75, unknown 15.7
2503 Female, age 72, unknown 15.5
1954 Female, age 42, unknown 15.1
Substantia nigra
nTPM: 14.7
2409 Female, age 72, unknown 17.0
1941 Male, age 53, unknown 15.6
1889 Female, age 72, unknown 15.1
2583 Male, age 75, right hemisphere 14.8
2590 Female, age 75, unknown 14.7
2699 Male, age 18, unknown 14.6
1851 Male, age 51, unknown 14.2
1916 Female, age 42, unknown 14.0
2241 Male, age 72, unknown 13.9
2665 Male, age 74, both hemispheres 13.1
Superior colliculus
nTPM: 14.8
1895 Male, age 76, right hemisphere 17.0
1913 Female, age 42, unknown 16.4
1839 Male, age 51, unknown 15.3
1995 Male, age 72, unknown 14.7
2664 Male, age 75, both hemispheres 14.7
2587 Male, age 74, left hemisphere 14.5
1796 Male, age 53, unknown 14.4
2087 Female, age 72, unknown 14.4
2261 Male, age 18, unknown 14.1
2668 Female, age 75, unknown 12.3
Ventral tegmental area
nTPM: 13.7
2223 Female, age 72, unknown 14.0
2218 Male, age 76, both hemispheres 13.9
2410 Female, age 72, unknown 13.9
1915 Female, age 42, unknown 13.5
2021 Male, age 53, unknown 13.4
1942 Male, age 51, unknown 13.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.7
Samples: 139

Max nTPM: 42.9
Min nTPM: 10.3
Std nTPM: 6.7
Median nTPM: 22.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 42.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 42.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 39.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 38.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 37.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 37.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 37.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 37.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 36.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 35.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 34.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.6
FF:10158-103A5 76 years, female 58.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.2
Pig sample Sample description nTPM
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 8.7
Min nTPM: 7.0
Sample A Female 7.0
Sample B Female 8.4
Sample C Male 8.6
Sample D Male 8.7
Periaqueductal gray
nTPM: 6.8
Samples: 3

Max nTPM: 7.3
Min nTPM: 6.4
Sample B Female 7.3
Sample C Male 6.4
Sample D Male 6.6
Substantia nigra
nTPM: 7.3
Samples: 4

Max nTPM: 8.3
Min nTPM: 6.4
Sample A Female 6.4
Sample B Female 7.5
Sample C Male 7.1
Sample D Male 8.3
Superior colliculi
nTPM: 7.6
Samples: 4

Max nTPM: 8.6
Min nTPM: 5.7
Sample A Female 7.4
Sample B Female 5.7
Sample C Male 8.5
Sample D Male 8.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.1
Sample C Female 0.1
Sample D Female 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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