MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:9.3 nTPM
HPA:9.3 nTPM
GTEx:9.4 nTPM
FANTOM5:19.0 Scaled Tags Per Million
Pig:28.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.3
2586 Male, age 75, left hemisphere 10.6
1833 Male, age 53, unknown 10.2
1830 Male, age 51, unknown 10.1
2666 Male, age 74, left hemisphere 10.1
2828 Female, age 72, unknown 9.7
1870 Female, age 42, unknown 9.4
1827 Male, age 72, unknown 8.7
2219 Male, age 76, both hemispheres 8.6
2411 Female, age 72, unknown 8.4
2019 Male, age 18, unknown 7.3
Dorsal raphe nucleus
nTPM: 8.1
2016 Female, age 72, unknown 8.9
2750 Male, age 76, both hemispheres 8.4
1828 Male, age 53, unknown 8.2
2047 Male, age 72, unknown 8.2
2298 Female, age 72, unknown 6.9
Inferior colliculus
nTPM: 8.4
2849 Male, age 72, unknown 9.3
1848 Female, age 42, unknown 8.6
1890 Male, age 53, unknown 8.3
2097 Female, age 72, unknown 7.4
Median raphe nucleus
nTPM: 7.3
2220 Male, age 76, midline 7.3
Pedunculopontine tegmental nucleus
nTPM: 8.0
2338 Male, age 61, both hemispheres 9.2
1921 Female, age 85, both hemispheres 7.7
2334 Male, age 80, both hemispheres 7.3
Periaquaductal grey, anterior
nTPM: 8.5
1947 Male, age 18, unknown 9.0
1795 Male, age 51, unknown 8.4
2502 Female, age 75, unknown 7.9
Periaquaductal grey, dorsal
nTPM: 9.1
1831 Male, age 72, unknown 9.5
2464 Female, age 72, unknown 9.4
2850 Male, age 76, both hemispheres 9.4
1840 Male, age 53, unknown 8.3
Periaquaductal grey, lateral
nTPM: 8.8
2053 Male, age 18, unknown 9.7
2140 Male, age 76, both hemispheres 9.4
2272 Male, age 74, both hemispheres 7.3
Pretectal area
nTPM: 8.6
2407 Male, age 75, both hemispheres 11.3
2825 Male, age 18, unknown 10.2
1815 Male, age 53, unknown 8.9
2316 Male, age 76, right hemisphere 8.9
2273 Male, age 74, both hemispheres 8.4
2667 Female, age 75, unknown 8.2
2224 Female, age 72, unknown 8.1
1817 Female, age 42, unknown 7.9
1816 Male, age 51, unknown 7.8
2007 Male, age 72, unknown 7.7
1944 Female, age 72, unknown 7.3
Red nucleus
nTPM: 9.2
2584 Male, age 75, left hemisphere 10.5
2588 Male, age 74, left hemisphere 9.9
2769 Male, age 72, unknown 9.9
2823 Male, age 76, right hemisphere 9.7
1865 Male, age 51, unknown 9.6
2227 Male, age 72, unknown 9.4
1954 Female, age 42, unknown 9.0
2725 Female, age 75, unknown 8.8
1904 Male, age 53, unknown 8.7
2503 Female, age 72, unknown 8.6
1821 Female, age 72, unknown 8.2
2785 Male, age 18, unknown 7.7
Substantia nigra
nTPM: 8.4
2583 Male, age 75, right hemisphere 10.8
2590 Female, age 75, unknown 10.5
2665 Male, age 74, both hemispheres 10.1
2699 Male, age 18, unknown 9.8
1941 Male, age 53, unknown 8.5
1889 Female, age 72, unknown 7.7
1851 Male, age 51, unknown 7.2
2241 Male, age 72, unknown 6.9
2409 Female, age 72, unknown 6.7
1916 Female, age 42, unknown 5.7
Superior colliculus
nTPM: 8.9
2664 Male, age 75, both hemispheres 11.7
1913 Female, age 42, unknown 10.0
1995 Male, age 72, unknown 9.6
1839 Male, age 51, unknown 9.0
2587 Male, age 74, left hemisphere 9.0
2087 Female, age 72, unknown 8.6
2668 Female, age 75, unknown 8.1
1796 Male, age 53, unknown 7.9
2261 Male, age 18, unknown 7.9
1895 Male, age 76, right hemisphere 7.7
Ventral tegmental area
nTPM: 7.9
2021 Male, age 53, unknown 8.8
1942 Male, age 51, unknown 8.5
2223 Female, age 72, unknown 8.0
1915 Female, age 42, unknown 7.8
2218 Male, age 76, both hemispheres 7.2
2410 Female, age 72, unknown 7.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.4
Samples: 139

Max nTPM: 16.3
Min nTPM: 5.0
Std nTPM: 2.3
Median nTPM: 9.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 16.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 16.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 15.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 14.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 14.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 14.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 14.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 13.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 13.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 13.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 13.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.0
FF:10158-103A5 76 years, female 19.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.9
Pig sample Sample description nTPM
Midbrain
nTPM: 28.9
Samples: 4

Max nTPM: 39.2
Min nTPM: 25.1
Sample A Female 39.2
Sample B Female 25.1
Sample C Male 25.8
Sample D Male 25.4
Periaqueductal gray
nTPM: 22.7
Samples: 3

Max nTPM: 24.9
Min nTPM: 20.6
Sample B Female 22.7
Sample C Male 24.9
Sample D Male 20.6
Substantia nigra
nTPM: 25.0
Samples: 4

Max nTPM: 26.8
Min nTPM: 23.4
Sample A Female 26.0
Sample B Female 23.4
Sample C Male 23.9
Sample D Male 26.8
Superior colliculi
nTPM: 28.5
Samples: 4

Max nTPM: 31.7
Min nTPM: 26.3
Sample A Female 31.7
Sample B Female 26.3
Sample C Male 28.6
Sample D Male 27.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.