MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:63.2 nTPM
HPA:63.2 nTPM
GTEx:117.3 nTPM
FANTOM5:86.0 Scaled Tags Per Million
Pig:21.6 nTPM
Mouse:2.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.1
2586 Male, age 75, left hemisphere 88.0
2411 Female, age 72, unknown 61.5
2019 Male, age 18, unknown 56.3
1870 Female, age 42, unknown 55.4
2828 Female, age 72, unknown 53.6
1830 Male, age 51, unknown 52.1
1833 Male, age 53, unknown 44.4
1827 Male, age 72, unknown 44.1
2666 Male, age 74, left hemisphere 43.9
2219 Male, age 76, both hemispheres 41.8
Dorsal raphe nucleus
nTPM: 51.4
2750 Male, age 76, both hemispheres 67.5
2047 Male, age 72, unknown 50.7
2016 Female, age 72, unknown 48.4
1828 Male, age 53, unknown 46.9
2298 Female, age 72, unknown 43.6
Inferior colliculus
nTPM: 34.4
1890 Male, age 53, unknown 38.5
1848 Female, age 42, unknown 35.3
2097 Female, age 72, unknown 32.9
2849 Male, age 72, unknown 30.8
Median raphe nucleus
nTPM: 50.9
2220 Male, age 76, midline 50.9
Pedunculopontine tegmental nucleus
nTPM: 39.4
2334 Male, age 80, both hemispheres 47.5
1921 Female, age 85, both hemispheres 42.7
2338 Male, age 61, both hemispheres 28.0
Periaquaductal grey, anterior
nTPM: 63.2
1795 Male, age 51, unknown 66.2
1947 Male, age 18, unknown 64.1
2502 Female, age 75, unknown 59.4
Periaquaductal grey, dorsal
nTPM: 30.7
1831 Male, age 72, unknown 33.9
2464 Female, age 72, unknown 31.4
1840 Male, age 53, unknown 30.5
2850 Male, age 76, both hemispheres 26.8
Periaquaductal grey, lateral
nTPM: 42.1
2272 Male, age 74, both hemispheres 59.7
2053 Male, age 18, unknown 37.2
2140 Male, age 76, both hemispheres 29.5
Pretectal area
nTPM: 48.3
2007 Male, age 72, unknown 60.7
2224 Female, age 72, unknown 54.5
2273 Male, age 74, both hemispheres 51.5
1817 Female, age 42, unknown 50.2
1815 Male, age 53, unknown 47.8
2667 Female, age 75, unknown 47.5
2407 Male, age 75, both hemispheres 46.2
1816 Male, age 51, unknown 45.0
2825 Male, age 18, unknown 44.0
1944 Female, age 72, unknown 42.9
2316 Male, age 76, right hemisphere 41.4
Red nucleus
nTPM: 59.6
2503 Female, age 72, unknown 79.9
2785 Male, age 18, unknown 74.3
2227 Male, age 72, unknown 68.9
2588 Male, age 74, left hemisphere 64.9
2769 Male, age 72, unknown 64.7
1904 Male, age 53, unknown 61.4
1954 Female, age 42, unknown 58.0
1865 Male, age 51, unknown 57.1
1821 Female, age 72, unknown 51.2
2584 Male, age 75, left hemisphere 49.4
2725 Female, age 75, unknown 44.7
2823 Male, age 76, right hemisphere 40.1
Substantia nigra
nTPM: 46.2
2583 Male, age 75, right hemisphere 65.9
1916 Female, age 42, unknown 56.2
1851 Male, age 51, unknown 53.9
1889 Female, age 72, unknown 50.7
1941 Male, age 53, unknown 49.1
2590 Female, age 75, unknown 45.9
2665 Male, age 74, both hemispheres 41.3
2409 Female, age 72, unknown 36.5
2699 Male, age 18, unknown 36.2
2241 Male, age 72, unknown 26.8
Superior colliculus
nTPM: 50.1
2668 Female, age 75, unknown 67.6
1995 Male, age 72, unknown 57.7
2587 Male, age 74, left hemisphere 57.0
2664 Male, age 75, both hemispheres 55.5
1913 Female, age 42, unknown 54.4
2261 Male, age 18, unknown 52.0
1796 Male, age 53, unknown 51.9
1839 Male, age 51, unknown 46.2
1895 Male, age 76, right hemisphere 31.9
2087 Female, age 72, unknown 27.1
Ventral tegmental area
nTPM: 53.2
2223 Female, age 72, unknown 61.5
2410 Female, age 72, unknown 52.4
1915 Female, age 42, unknown 51.9
2218 Male, age 76, both hemispheres 51.7
2021 Male, age 53, unknown 51.5
1942 Male, age 51, unknown 50.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 117.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 117.3
Samples: 139

Max nTPM: 558.5
Min nTPM: 13.7
Std nTPM: 79.9
Median nTPM: 103.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 558.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 489.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 424.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 334.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 319.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 239.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 229.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 228.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 226.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 224.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 224.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.0
FF:10158-103A5 76 years, female 86.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.6
Pig sample Sample description nTPM
Midbrain
nTPM: 21.5
Samples: 4

Max nTPM: 24.4
Min nTPM: 19.5
Sample A Female 24.4
Sample B Female 19.5
Sample C Male 21.7
Sample D Male 20.4
Periaqueductal gray
nTPM: 21.6
Samples: 3

Max nTPM: 23.9
Min nTPM: 19.8
Sample B Female 21.1
Sample C Male 23.9
Sample D Male 19.8
Substantia nigra
nTPM: 20.0
Samples: 4

Max nTPM: 37.6
Min nTPM: 8.1
Sample A Female 37.6
Sample B Female 15.5
Sample C Male 18.9
Sample D Male 8.1
Superior colliculi
nTPM: 20.0
Samples: 4

Max nTPM: 33.3
Min nTPM: 12.4
Sample A Female 33.3
Sample B Female 12.4
Sample C Male 17.3
Sample D Male 17.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.4
Samples: 4

Max nTPM: 3.8
Min nTPM: 1.6
Sample A Male 3.8
Sample B Male 1.8
Sample C Female 2.5
Sample D Female 1.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
74581181 Antisense, RP_060215_02_G02, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.