BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:9.2 nTPM
HPA:9.2 nTPM
GTEx:20.2 nTPM
FANTOM5:35.8 Scaled Tags Per Million
Mouse:14.6 nTPM
Allen mouse:3.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039576
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 9.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.2
1857 Female, age 85, left hemisphere 11.7
2290 Female, age 72, unknown 10.7
1854 Male, age 80, left hemisphere 10.5
2289 Male, age 61, right hemisphere 10.2
1781 Male, age 74, unknown 9.7
2846 Female, age 79, unknown 8.9
2288 Male, age 75, left hemisphere 6.9
2481 Female, age 94, left hemisphere 4.7
Claustrum
nTPM: 9.2
2568 Male, age 61, both hemispheres 13.6
2645 Female, age 72, unknown 11.2
2284 Female, age 91, both hemispheres 9.2
1956 Male, age 74, unknown 9.1
2196 Female, age 79, unknown 8.4
2292 Female, age 85, both hemispheres 8.4
2491 Male, age 75, both hemispheres 8.1
2198 Male, age 80, both hemispheres 7.6
2392 Female, age 94, both hemispheres 7.3
Globus pallidus, externus
nTPM: 5.6
2646 Male, age 61, right hemisphere 7.4
2567 Female, age 72, unknown 5.4
2772 Female, age 79, unknown 5.3
2395 Male, age 75, both hemispheres 5.2
1996 Male, age 80, right hemisphere 4.7
Globus pallidus, internus
nTPM: 5.3
2111 Female, age 85, right hemisphere 6.0
2778 Female, age 91, both hemispheres 5.8
2566 Female, age 72, unknown 5.6
1818 Male, age 74, unknown 5.5
2037 Male, age 80, right hemisphere 5.2
2483 Female, age 94, right hemisphere 4.6
2287 Male, age 75, right hemisphere 4.4
Nucleus accumbens
nTPM: 8.8
1806 Female, age 85, left hemisphere 11.8
2824 Male, age 61, right hemisphere 11.8
1856 Female, age 91, right hemisphere 11.6
1783 Male, age 74, unknown 9.2
2698 Female, age 72, unknown 8.7
2286 Male, age 75, left hemisphere 7.4
2732 Male, age 80, right hemisphere 6.3
2391 Female, age 94, left hemisphere 3.9
Nucleus basalis of Meynert
nTPM: 7.3
2569 Male, age 61, both hemispheres 8.0
2484 Female, age 94, left hemisphere 7.3
2393 Male, age 80, right hemisphere 7.2
2821 Male, age 75, both hemispheres 6.7
Nucleus of the diagonal band
nTPM: 8.1
2029 Male, age 61, right hemisphere 11.5
2195 Female, age 85, both hemispheres 9.4
2775 Male, age 80, right hemisphere 7.2
1812 Female, age 91, both hemispheres 6.3
1979 Male, age 74, unknown 6.3
Olfactory tubercle
nTPM: 8.5
2487 Female, age 94, left hemisphere 9.9
2856 Male, age 75, right hemisphere 9.5
1998 Female, age 91, both hemispheres 8.3
1846 Male, age 80, right hemisphere 6.4
Putamen
nTPM: 9.1
1838 Male, age 80, right hemisphere 12.3
1937 Female, age 91, right hemisphere 11.9
2489 Female, age 72, unknown 9.6
1829 Male, age 74, unknown 8.7
2647 Male, age 75, left hemisphere 8.1
2466 Female, age 79, unknown 7.1
2482 Female, age 94, left hemisphere 6.2
Septal nuclei
nTPM: 7.2
1960 Male, age 74, unknown 8.5
2629 Female, age 94, right hemisphere 8.5
2059 Female, age 85, both hemispheres 7.4
2009 Female, age 91, both hemispheres 6.9
2394 Male, age 61, left hemisphere 6.9
2031 Female, age 72, unknown 6.3
2199 Male, age 80, right hemisphere 5.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.2
Samples: 246

Max nTPM: 46.3
Min nTPM: 1.5
Std nTPM: 7.9
Median nTPM: 19.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 46.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 45.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 45.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 43.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 43.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 41.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 38.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 38.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 37.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 36.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 36.4
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 19.7
Samples: 246

Max nTPM: 56.2
Min nTPM: 4.3
Std nTPM: 7.4
Median nTPM: 18.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 56.2
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 45.3
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 40.3
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 40.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 37.9
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 37.9
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 37.4
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 36.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 36.2
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 35.7
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 35.2
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 19.6
Samples: 205

Max nTPM: 50.8
Min nTPM: 4.7
Std nTPM: 7.8
Median nTPM: 18.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 50.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 47.5
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 43.0
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 39.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 38.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 37.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 36.9
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 36.8
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 36.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 35.8
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 34.6
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.3
FF:10164-103B2 76 years, female 20.3
Globus pallidus
Scaled Tags Per Million: 22.8
FF:10175-103C4 60 years, female 31.5
FF:10161-103A8 76 years, female 14.0
Nucleus accumbens
Scaled Tags Per Million: 32.8
FF:10037-101F1 23-56 years, mixed 32.8
Putamen
Scaled Tags Per Million: 35.8
FF:10176-103C5 60 years, female 35.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.4
Samples: 4

Max nTPM: 15.1
Min nTPM: 9.5
Sample A Male 15.1
Sample B Male 14.6
Sample C Female 9.5
Sample D Female 10.2
Septum
nTPM: 14.6
Samples: 4

Max nTPM: 16.0
Min nTPM: 13.0
Sample A Male 14.6
Sample B Male 13.0
Sample C Female 14.7
Sample D Female 16.0
Ventral forebrain
nTPM: 13.0
Samples: 4

Max nTPM: 15.5
Min nTPM: 11.8
Sample A Male 12.1
Sample B Male 12.6
Sample C Female 15.5
Sample D Female 11.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.1
1780 Antisense, RP_040604_01_C07, Mouse strain C57BL/6J (56 days, male) 2.1
1781 Antisense, RP_040604_01_C07, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 3.2
1780 Antisense, RP_040604_01_C07, Mouse strain C57BL/6J (56 days, male) 3.2
1781 Antisense, RP_040604_01_C07, Mouse strain C57BL/6J (56 days, male) 1.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.