BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:54.9 nTPM
HPA:54.9 nTPM
GTEx:62.6 nTPM
FANTOM5:166.2 Scaled Tags Per Million
Pig:165.6 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 54.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.4
2481 Female, age 94, left hemisphere 52.4
2288 Male, age 75, left hemisphere 48.3
1857 Female, age 85, left hemisphere 43.0
2846 Female, age 79, unknown 42.2
1781 Male, age 74, unknown 41.8
1854 Male, age 80, left hemisphere 40.4
2290 Female, age 72, unknown 40.4
2289 Male, age 61, right hemisphere 38.2
Claustrum
nTPM: 44.0
2198 Male, age 80, both hemispheres 50.5
2284 Female, age 91, both hemispheres 47.2
1956 Male, age 74, unknown 46.9
2568 Male, age 61, both hemispheres 45.5
2645 Female, age 72, unknown 44.6
2196 Female, age 79, unknown 41.8
2392 Female, age 94, both hemispheres 41.7
2292 Female, age 85, both hemispheres 39.4
2491 Male, age 75, both hemispheres 38.3
Globus pallidus, externus
nTPM: 29.7
2772 Female, age 79, unknown 32.4
2395 Male, age 75, both hemispheres 31.7
2567 Female, age 72, unknown 29.9
1996 Male, age 80, right hemisphere 29.0
2646 Male, age 61, right hemisphere 25.6
Globus pallidus, internus
nTPM: 29.2
1818 Male, age 74, unknown 38.8
2483 Female, age 94, right hemisphere 32.3
2037 Male, age 80, right hemisphere 31.2
2566 Female, age 72, unknown 28.4
2287 Male, age 75, right hemisphere 27.8
2111 Female, age 85, right hemisphere 24.1
2778 Female, age 91, both hemispheres 21.8
Nucleus accumbens
nTPM: 43.2
1856 Female, age 91, right hemisphere 52.6
2286 Male, age 75, left hemisphere 49.2
2391 Female, age 94, left hemisphere 45.6
2698 Female, age 72, unknown 45.0
2824 Male, age 61, right hemisphere 41.8
1806 Female, age 85, left hemisphere 41.1
1783 Male, age 74, unknown 38.7
2732 Male, age 80, right hemisphere 31.3
Nucleus basalis of Meynert
nTPM: 36.8
2821 Male, age 75, both hemispheres 45.2
2393 Male, age 80, right hemisphere 39.5
2484 Female, age 94, left hemisphere 37.2
2569 Male, age 61, both hemispheres 25.2
Nucleus of the diagonal band
nTPM: 54.9
1812 Female, age 91, both hemispheres 63.6
2775 Male, age 80, right hemisphere 57.8
2195 Female, age 85, both hemispheres 57.4
2029 Male, age 61, right hemisphere 50.3
1979 Male, age 74, unknown 45.1
Olfactory tubercle
nTPM: 53.9
1998 Female, age 91, both hemispheres 55.4
1846 Male, age 80, right hemisphere 55.3
2856 Male, age 75, right hemisphere 53.8
2487 Female, age 94, left hemisphere 51.3
Putamen
nTPM: 42.7
2482 Female, age 94, left hemisphere 50.5
1838 Male, age 80, right hemisphere 47.5
1829 Male, age 74, unknown 44.5
1937 Female, age 91, right hemisphere 42.7
2647 Male, age 75, left hemisphere 39.3
2489 Female, age 72, unknown 38.3
2466 Female, age 79, unknown 35.9
Septal nuclei
nTPM: 48.6
2629 Female, age 94, right hemisphere 66.1
1960 Male, age 74, unknown 57.3
2009 Female, age 91, both hemispheres 51.6
2031 Female, age 72, unknown 47.9
2199 Male, age 80, right hemisphere 43.2
2059 Female, age 85, both hemispheres 42.1
2394 Male, age 61, left hemisphere 32.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 62.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 57.1
Samples: 246

Max nTPM: 96.5
Min nTPM: 31.3
Std nTPM: 10.0
Median nTPM: 55.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 96.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 87.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 86.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 86.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 83.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 78.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 77.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 76.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 75.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 75.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 74.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 62.6
Samples: 246

Max nTPM: 86.5
Min nTPM: 35.5
Std nTPM: 10.1
Median nTPM: 62.7
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 86.5
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 84.9
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 83.4
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 82.2
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 81.8
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 81.1
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 80.6
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 80.3
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 80.0
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 79.2
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 79.1
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Brain - Putamen (basal ganglia)
Average nTPM: 57.3
Samples: 205

Max nTPM: 79.6
Min nTPM: 34.4
Std nTPM: 8.6
Median nTPM: 58.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 79.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 77.8
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 77.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 77.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 76.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 75.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 74.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 74.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 72.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 71.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 70.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 166.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 94.4
FF:10164-103B2 76 years, female 94.4
Globus pallidus
Scaled Tags Per Million: 75.7
FF:10175-103C4 60 years, female 78.1
FF:10161-103A8 76 years, female 73.3
Nucleus accumbens
Scaled Tags Per Million: 166.2
FF:10037-101F1 23-56 years, mixed 166.2
Putamen
Scaled Tags Per Million: 117.3
FF:10176-103C5 60 years, female 117.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 165.6
Pig sample Sample description nTPM
Caudate
nTPM: 143.0
Samples: 4

Max nTPM: 179.8
Min nTPM: 128.4
Sample A Female 129.5
Sample B Female 134.2
Sample C Male 179.8
Sample D Male 128.4
Putamen
nTPM: 165.6
Samples: 4

Max nTPM: 228.1
Min nTPM: 125.3
Sample A Female 125.3
Sample B Female 139.1
Sample C Male 228.1
Sample D Male 170.0
Septum
nTPM: 133.1
Samples: 4

Max nTPM: 150.6
Min nTPM: 117.0
Sample A Female 125.9
Sample B Female 117.0
Sample C Male 150.6
Sample D Male 138.9
Ventral pallidum
nTPM: 131.2
Samples: 4

Max nTPM: 150.3
Min nTPM: 120.6
Sample A Female 129.5
Sample B Female 124.3
Sample C Male 150.3
Sample D Male 120.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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