MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:44.5 nTPM
HPA:44.5 nTPM
GTEx:57.3 nTPM
FANTOM5:64.0 Scaled Tags Per Million
Pig:165.0 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.6
2219 Male, age 76, both hemispheres 40.4
1827 Male, age 72, unknown 40.1
2019 Male, age 18, unknown 39.1
2666 Male, age 74, left hemisphere 39.1
1833 Male, age 53, unknown 35.7
2828 Female, age 72, unknown 34.6
1870 Female, age 42, unknown 33.4
2411 Female, age 72, unknown 32.5
1830 Male, age 51, unknown 32.3
2586 Male, age 75, left hemisphere 28.9
Dorsal raphe nucleus
nTPM: 35.5
1828 Male, age 53, unknown 40.6
2047 Male, age 72, unknown 35.7
2298 Female, age 72, unknown 35.1
2750 Male, age 76, both hemispheres 33.4
2016 Female, age 72, unknown 32.6
Inferior colliculus
nTPM: 40.0
2849 Male, age 72, unknown 45.7
1848 Female, age 42, unknown 38.2
1890 Male, age 53, unknown 38.1
2097 Female, age 72, unknown 37.9
Median raphe nucleus
nTPM: 42.7
2220 Male, age 76, midline 42.7
Pedunculopontine tegmental nucleus
nTPM: 43.8
2338 Male, age 61, both hemispheres 47.3
2334 Male, age 80, both hemispheres 43.2
1921 Female, age 85, both hemispheres 41.0
Periaquaductal grey, anterior
nTPM: 34.6
1795 Male, age 51, unknown 36.9
1947 Male, age 18, unknown 34.3
2502 Female, age 75, unknown 32.6
Periaquaductal grey, dorsal
nTPM: 41.4
2850 Male, age 76, both hemispheres 48.0
1840 Male, age 53, unknown 42.5
1831 Male, age 72, unknown 40.7
2464 Female, age 72, unknown 34.4
Periaquaductal grey, lateral
nTPM: 37.0
2140 Male, age 76, both hemispheres 39.1
2272 Male, age 74, both hemispheres 38.8
2053 Male, age 18, unknown 33.2
Pretectal area
nTPM: 44.5
1944 Female, age 72, unknown 56.4
1817 Female, age 42, unknown 54.5
1816 Male, age 51, unknown 53.6
1815 Male, age 53, unknown 47.4
2007 Male, age 72, unknown 47.0
2667 Female, age 75, unknown 45.5
2224 Female, age 72, unknown 39.3
2407 Male, age 75, both hemispheres 39.3
2273 Male, age 74, both hemispheres 38.5
2825 Male, age 18, unknown 37.1
2316 Male, age 76, right hemisphere 31.2
Red nucleus
nTPM: 33.2
2785 Male, age 18, unknown 38.2
2725 Female, age 75, unknown 37.8
2823 Male, age 76, right hemisphere 37.6
1821 Female, age 72, unknown 37.0
2588 Male, age 74, left hemisphere 35.5
1954 Female, age 42, unknown 35.0
2503 Female, age 72, unknown 31.0
2227 Male, age 72, unknown 30.6
2584 Male, age 75, left hemisphere 30.5
2769 Male, age 72, unknown 29.6
1865 Male, age 51, unknown 28.0
1904 Male, age 53, unknown 27.9
Substantia nigra
nTPM: 42.5
1916 Female, age 42, unknown 50.1
1889 Female, age 72, unknown 45.9
2409 Female, age 72, unknown 44.1
1941 Male, age 53, unknown 43.4
2241 Male, age 72, unknown 42.8
2665 Male, age 74, both hemispheres 42.8
2699 Male, age 18, unknown 42.3
1851 Male, age 51, unknown 41.0
2590 Female, age 75, unknown 36.7
2583 Male, age 75, right hemisphere 36.0
Superior colliculus
nTPM: 38.5
2087 Female, age 72, unknown 47.8
1839 Male, age 51, unknown 40.8
1895 Male, age 76, right hemisphere 39.4
1796 Male, age 53, unknown 39.2
2261 Male, age 18, unknown 39.1
2668 Female, age 75, unknown 39.1
2664 Male, age 75, both hemispheres 38.9
2587 Male, age 74, left hemisphere 34.5
1913 Female, age 42, unknown 33.4
1995 Male, age 72, unknown 33.0
Ventral tegmental area
nTPM: 37.0
2218 Male, age 76, both hemispheres 45.0
1915 Female, age 42, unknown 39.5
1942 Male, age 51, unknown 35.9
2410 Female, age 72, unknown 34.5
2021 Male, age 53, unknown 33.7
2223 Female, age 72, unknown 33.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.3
Samples: 139

Max nTPM: 97.4
Min nTPM: 27.5
Std nTPM: 13.1
Median nTPM: 56.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 97.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 96.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 90.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 90.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 90.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 83.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 82.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 79.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 77.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 75.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 75.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.0
FF:10158-103A5 76 years, female 64.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 165.0
Pig sample Sample description nTPM
Midbrain
nTPM: 154.5
Samples: 4

Max nTPM: 205.5
Min nTPM: 124.8
Sample A Female 124.8
Sample B Female 139.5
Sample C Male 205.5
Sample D Male 148.1
Periaqueductal gray
nTPM: 140.3
Samples: 3

Max nTPM: 162.8
Min nTPM: 128.6
Sample B Female 129.4
Sample C Male 162.8
Sample D Male 128.6
Substantia nigra
nTPM: 144.7
Samples: 4

Max nTPM: 182.0
Min nTPM: 109.2
Sample A Female 172.0
Sample B Female 115.5
Sample C Male 182.0
Sample D Male 109.2
Superior colliculi
nTPM: 165.0
Samples: 4

Max nTPM: 201.3
Min nTPM: 101.4
Sample A Female 174.2
Sample B Female 101.4
Sample C Male 201.3
Sample D Male 183.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.