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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:155.7 nTPM
HPA:155.7 nTPM
GTEx:1077.2 nTPM
FANTOM5:82.2 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 155.7
Sample id Sample description nTPM
Amygdala
nTPM: 155.7
2695 Female, age 67, right hemisphere 261.9
1987 Female, age 91, left hemisphere 171.4
2514 Male, age 75, right hemisphere 134.3
2814 Male, age 76, right hemisphere 109.9
2517 Female, age 94, left hemisphere 101.2
Basal amygdala
nTPM: 116.8
2827 Female, age 67, right hemisphere 159.6
2609 Male, age 75, right hemisphere 155.4
2110 Male, age 80, left hemisphere 134.8
1955 Male, age 76, both hemispheres 96.6
2243 Female, age 91, right hemisphere 78.1
2685 Female, age 94, left hemisphere 76.4
Central amygdala
nTPM: 111.3
2826 Female, age 94, left hemisphere 135.6
2515 Male, age 75, right hemisphere 128.1
1905 Male, age 76, both hemispheres 106.1
2239 Male, age 80, left hemisphere 104.3
2701 Female, age 91, right hemisphere 82.5
Corticomedial amygdala
nTPM: 99.5
2428 Male, age 75, right hemisphere 126.4
2429 Female, age 94, left hemisphere 108.3
2829 Male, age 80, left hemisphere 102.6
2535 Female, age 67, right hemisphere 99.0
2240 Male, age 76, both hemispheres 85.6
2242 Female, age 91, right hemisphere 74.9
Lateral amygdala
nTPM: 140.5
2516 Male, age 75, right hemisphere 297.9
2830 Female, age 67, right hemisphere 141.1
2534 Female, age 94, left hemisphere 127.8
2256 Male, age 80, left hemisphere 102.5
1883 Male, age 76, both hemispheres 92.7
2255 Female, age 91, right hemisphere 80.8
Stria terminalis, bed nucleus
nTPM: 79.0
2486 Female, age 94, both hemispheres 81.4
2201 Male, age 74, unknown 80.3
1974 Female, age 91, both hemispheres 75.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1077.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1077.2
Samples: 152

Max nTPM: 9716.4
Min nTPM: 41.7
Std nTPM: 1440.0
Median nTPM: 617.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 9716.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 9044.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 5803.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 5729.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 5148.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4416.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 4136.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 4027.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 3681.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 3375.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 3176.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2900.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2835.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2444.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 2366.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2311.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 2190.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2152.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 2119.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1986.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1958.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1951.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1935.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1877.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1781.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1744.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1648.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1560.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1535.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1407.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1359.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1286.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1281.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1273.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1221.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1212.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1201.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1188.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1168.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1168.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1136.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1113.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1107.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1106.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1090.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1088.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1086.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1083.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1044.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 999.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 970.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 963.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 963.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 938.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 926.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 925.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 922.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 887.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 865.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 852.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 834.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 806.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 794.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 792.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 780.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 777.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 730.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 722.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 708.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 700.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 678.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 657.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 655.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 639.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 633.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 631.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 604.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 598.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 594.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 584.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 577.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 570.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 557.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 534.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 503.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 500.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 483.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 477.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 475.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 475.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 448.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 434.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 433.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 422.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 421.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 416.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 401.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 400.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 386.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 384.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 374.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 371.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 370.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 359.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 351.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 345.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 335.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 320.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 318.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 316.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 314.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 301.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 301.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 291.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 290.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 284.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 268.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 263.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 250.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 230.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 225.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 217.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 212.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 198.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 198.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 194.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 191.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 190.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 186.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 179.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 179.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 169.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 157.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 156.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 156.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 154.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 149.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 145.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 144.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 144.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 140.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 139.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 138.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 136.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 136.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 130.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 117.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 116.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 80.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 58.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 54.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 41.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 82.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 82.2
FF:10151-102I7 76 years, female 82.2

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