MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:243.5 nTPM
HPA:243.5 nTPM
GTEx:1782.4 nTPM
FANTOM5:320.6 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 243.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 149.9
2219 Male, age 76, both hemispheres 444.1
2828 Female, age 72, unknown 144.0
2586 Male, age 75, left hemisphere 133.3
2411 Female, age 72, unknown 126.2
2019 Male, age 18, unknown 120.8
1830 Male, age 51, unknown 119.1
1833 Male, age 53, unknown 115.0
1870 Female, age 42, unknown 104.6
2666 Male, age 74, left hemisphere 101.0
1827 Male, age 72, unknown 91.1
Dorsal raphe nucleus
nTPM: 157.2
2298 Female, age 72, unknown 387.7
1828 Male, age 53, unknown 109.5
2016 Female, age 72, unknown 104.5
2750 Male, age 76, both hemispheres 103.6
2047 Male, age 72, unknown 80.8
Inferior colliculus
nTPM: 101.7
1890 Male, age 53, unknown 124.9
2097 Female, age 72, unknown 97.4
1848 Female, age 42, unknown 97.2
2849 Male, age 72, unknown 87.3
Median raphe nucleus
nTPM: 113.1
2220 Male, age 76, midline 113.1
Pedunculopontine tegmental nucleus
nTPM: 132.5
2334 Male, age 80, both hemispheres 180.7
2338 Male, age 61, both hemispheres 108.9
1921 Female, age 85, both hemispheres 108.0
Periaquaductal grey, anterior
nTPM: 101.8
2502 Female, age 75, unknown 125.0
1795 Male, age 51, unknown 94.5
1947 Male, age 18, unknown 86.0
Periaquaductal grey, dorsal
nTPM: 104.5
1831 Male, age 72, unknown 148.6
2464 Female, age 72, unknown 99.9
2850 Male, age 76, both hemispheres 92.6
1840 Male, age 53, unknown 76.9
Periaquaductal grey, lateral
nTPM: 88.8
2053 Male, age 18, unknown 94.2
2272 Male, age 74, both hemispheres 90.2
2140 Male, age 76, both hemispheres 82.1
Pretectal area
nTPM: 101.9
1817 Female, age 42, unknown 118.8
2316 Male, age 76, right hemisphere 116.1
1816 Male, age 51, unknown 111.9
2667 Female, age 75, unknown 109.0
2007 Male, age 72, unknown 104.1
2825 Male, age 18, unknown 103.7
1815 Male, age 53, unknown 102.6
2407 Male, age 75, both hemispheres 92.0
2273 Male, age 74, both hemispheres 89.3
2224 Female, age 72, unknown 87.2
1944 Female, age 72, unknown 86.1
Red nucleus
nTPM: 133.5
1904 Male, age 53, unknown 195.7
1821 Female, age 72, unknown 186.2
2227 Male, age 72, unknown 151.9
2769 Male, age 72, unknown 150.0
2503 Female, age 72, unknown 130.2
1865 Male, age 51, unknown 127.0
2823 Male, age 76, right hemisphere 120.0
1954 Female, age 42, unknown 114.0
2588 Male, age 74, left hemisphere 112.7
2785 Male, age 18, unknown 109.0
2584 Male, age 75, left hemisphere 103.1
2725 Female, age 75, unknown 102.5
Substantia nigra
nTPM: 134.2
1851 Male, age 51, unknown 177.1
2699 Male, age 18, unknown 175.5
2665 Male, age 74, both hemispheres 173.5
2241 Male, age 72, unknown 156.0
1916 Female, age 42, unknown 126.8
2409 Female, age 72, unknown 123.2
2583 Male, age 75, right hemisphere 104.4
1941 Male, age 53, unknown 102.0
1889 Female, age 72, unknown 101.9
2590 Female, age 75, unknown 101.8
Superior colliculus
nTPM: 110.4
2587 Male, age 74, left hemisphere 141.8
2668 Female, age 75, unknown 124.2
1995 Male, age 72, unknown 120.6
1895 Male, age 76, right hemisphere 118.6
1796 Male, age 53, unknown 111.3
2261 Male, age 18, unknown 109.9
1839 Male, age 51, unknown 103.8
1913 Female, age 42, unknown 101.3
2087 Female, age 72, unknown 98.2
2664 Male, age 75, both hemispheres 74.4
Ventral tegmental area
nTPM: 243.5
1915 Female, age 42, unknown 333.5
2218 Male, age 76, both hemispheres 322.9
2021 Male, age 53, unknown 280.9
2410 Female, age 72, unknown 180.6
1942 Male, age 51, unknown 175.9
2223 Female, age 72, unknown 167.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1782.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1782.4
Samples: 139

Max nTPM: 27835.6
Min nTPM: 51.7
Std nTPM: 3217.4
Median nTPM: 832.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 27835.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 16710.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 12202.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 10145.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 9682.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 8751.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 7662.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 6255.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 5330.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 4738.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 4325.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 320.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 320.6
FF:10158-103A5 76 years, female 320.6

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The Human Protein Atlas

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