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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:316.2 nTPM
HPA:316.2 nTPM
GTEx:1248.1 nTPM
FANTOM5:227.8 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 316.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 113.2
1981 Female, age 72, midline 136.2
2048 Male, age 55, midline 115.8
2565 Male, age 75, midline 110.5
2816 Male, age 47, midline 105.2
2194 Female, age 79, both hemispheres 98.5
Cervical spinal cord, dorsal horn
nTPM: 107.6
2173 Female, age 72, unknown 138.9
2297 Male, age 75, both hemispheres 111.2
2296 Male, age 66, both hemispheres 104.3
2721 Male, age 90, both hemispheres 104.2
1877 Male, age 55, unknown 98.5
2069 Male, age 47, both hemispheres 88.5
Cervical spinal cord, ventral horn
nTPM: 316.2
2098 Female, age 72, unknown 682.2
2480 Male, age 75, both hemispheres 485.1
2809 Male, age 90, both hemispheres 268.5
2820 Female, age 79, both hemispheres 170.5
2295 Male, age 66, both hemispheres 157.8
2068 Male, age 55, unknown 133.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1248.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1248.1
Samples: 159

Max nTPM: 8512.7
Min nTPM: 56.3
Std nTPM: 1466.0
Median nTPM: 744.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 8512.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 8481.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 6436.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 5749.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 5505.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 5417.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 5278.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 4596.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 4471.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 4159.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 3808.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 3196.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 3147.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 3020.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 2985.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2829.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 2787.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2764.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2695.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 2472.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 2415.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 2213.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2199.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 2067.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 2030.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1927.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1895.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1863.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1824.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1783.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1765.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1764.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1750.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1746.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1722.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1681.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1668.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1634.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1593.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1569.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1518.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1511.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1452.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1412.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1400.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1398.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1394.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1393.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1358.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1354.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1345.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1336.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1281.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1254.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1227.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1213.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1201.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1167.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1065.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1064.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1043.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1042.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1029.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1005.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 999.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 972.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 969.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 958.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 951.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 946.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 943.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 894.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 871.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 853.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 831.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 819.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 811.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 801.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 769.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 744.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 736.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 732.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 731.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 730.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 719.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 713.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 693.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 683.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 654.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 645.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 636.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 635.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 606.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 602.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 598.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 570.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 570.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 554.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 545.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 527.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 526.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 506.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 499.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 467.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 436.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 432.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 412.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 394.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 394.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 391.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 377.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 377.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 367.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 359.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 355.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 352.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 347.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 340.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 336.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 331.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 327.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 321.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 320.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 305.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 293.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 293.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 288.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 268.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 263.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 262.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 248.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 247.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 247.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 238.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 224.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 220.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 204.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 199.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 198.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 191.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 185.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 177.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 175.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 172.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 171.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 168.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 167.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 162.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 146.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 122.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 118.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 89.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 87.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 76.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 69.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 67.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 62.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 57.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 56.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 227.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 227.8
FF:10181-103D1 60 years, female 370.5
FF:10159-103A6 76 years, female 85.1

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