MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:8131.2 nTPM
HPA:8131.2 nTPM
GTEx:6.2 nTPM
FANTOM5:9.1 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8131.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8122.8
2219 Male, age 76, both hemispheres 8126.1
1830 Male, age 51, unknown 8124.9
2666 Male, age 74, left hemisphere 8124.2
2828 Female, age 72, unknown 8124.2
1833 Male, age 53, unknown 8123.4
1870 Female, age 42, unknown 8123.3
2019 Male, age 18, unknown 8121.0
2411 Female, age 72, unknown 8120.8
1827 Male, age 72, unknown 8120.4
2586 Male, age 75, left hemisphere 8120.1
Dorsal raphe nucleus
nTPM: 8122.1
2750 Male, age 76, both hemispheres 8125.5
2047 Male, age 72, unknown 8123.1
1828 Male, age 53, unknown 8121.6
2016 Female, age 72, unknown 8121.6
2298 Female, age 72, unknown 8118.4
Inferior colliculus
nTPM: 8122.7
2849 Male, age 72, unknown 8126.2
1890 Male, age 53, unknown 8123.9
1848 Female, age 42, unknown 8121.6
2097 Female, age 72, unknown 8119.0
Median raphe nucleus
nTPM: 8124.6
2220 Male, age 76, midline 8124.6
Pedunculopontine tegmental nucleus
nTPM: 8131.2
2338 Male, age 61, both hemispheres 8145.5
2334 Male, age 80, both hemispheres 8125.7
1921 Female, age 85, both hemispheres 8122.4
Periaquaductal grey, anterior
nTPM: 8119.5
1947 Male, age 18, unknown 8120.7
2502 Female, age 75, unknown 8119.4
1795 Male, age 51, unknown 8118.6
Periaquaductal grey, dorsal
nTPM: 8124.3
2850 Male, age 76, both hemispheres 8133.3
1831 Male, age 72, unknown 8122.5
1840 Male, age 53, unknown 8121.8
2464 Female, age 72, unknown 8119.6
Periaquaductal grey, lateral
nTPM: 8123.4
2140 Male, age 76, both hemispheres 8123.9
2272 Male, age 74, both hemispheres 8123.7
2053 Male, age 18, unknown 8122.8
Pretectal area
nTPM: 8122.7
2407 Male, age 75, both hemispheres 8125.7
2667 Female, age 75, unknown 8125.7
2224 Female, age 72, unknown 8124.2
1815 Male, age 53, unknown 8123.7
2316 Male, age 76, right hemisphere 8123.7
2007 Male, age 72, unknown 8122.9
2273 Male, age 74, both hemispheres 8122.4
2825 Male, age 18, unknown 8121.2
1817 Female, age 42, unknown 8120.8
1944 Female, age 72, unknown 8120.1
1816 Male, age 51, unknown 8119.1
Red nucleus
nTPM: 8122.9
2823 Male, age 76, right hemisphere 8129.2
2503 Female, age 72, unknown 8126.4
1865 Male, age 51, unknown 8123.6
2725 Female, age 75, unknown 8123.4
1904 Male, age 53, unknown 8122.8
2584 Male, age 75, left hemisphere 8122.6
2769 Male, age 72, unknown 8122.2
2785 Male, age 18, unknown 8122.2
1954 Female, age 42, unknown 8121.7
2227 Male, age 72, unknown 8121.7
1821 Female, age 72, unknown 8120.2
2588 Male, age 74, left hemisphere 8119.1
Substantia nigra
nTPM: 8122.9
2699 Male, age 18, unknown 8130.7
2583 Male, age 75, right hemisphere 8123.9
1916 Female, age 42, unknown 8123.2
1851 Male, age 51, unknown 8122.9
1941 Male, age 53, unknown 8122.9
2409 Female, age 72, unknown 8122.7
2665 Male, age 74, both hemispheres 8122.7
2241 Male, age 72, unknown 8120.7
2590 Female, age 75, unknown 8119.8
1889 Female, age 72, unknown 8119.7
Superior colliculus
nTPM: 8121.3
1913 Female, age 42, unknown 8125.4
2087 Female, age 72, unknown 8122.8
1995 Male, age 72, unknown 8122.5
1895 Male, age 76, right hemisphere 8122.1
2664 Male, age 75, both hemispheres 8121.9
1839 Male, age 51, unknown 8121.8
2668 Female, age 75, unknown 8120.8
2261 Male, age 18, unknown 8118.6
2587 Male, age 74, left hemisphere 8118.6
1796 Male, age 53, unknown 8118.2
Ventral tegmental area
nTPM: 8123.3
2021 Male, age 53, unknown 8125.2
1942 Male, age 51, unknown 8124.7
2218 Male, age 76, both hemispheres 8124.0
1915 Female, age 42, unknown 8123.0
2223 Female, age 72, unknown 8122.8
2410 Female, age 72, unknown 8119.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.2
Samples: 139

Max nTPM: 97.0
Min nTPM: 0.7
Std nTPM: 12.6
Median nTPM: 2.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 97.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 69.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 51.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 43.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 38.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 38.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 34.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 32.5
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 28.0
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 27.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 15.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.1
FF:10158-103A5 76 years, female 9.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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