BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1.0 nTPM
HPA:1.0 nTPM
GTEx:12.3 nTPM
FANTOM5:53.0 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA044617Antibody HPA052450
Glial cells MediumHigh
Neuronal cells HighHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.2
2846 Female, age 79, unknown 0.8
1857 Female, age 85, left hemisphere 0.5
2290 Female, age 72, unknown 0.2
2288 Male, age 75, left hemisphere 0.1
1781 Male, age 74, unknown 0.0
1854 Male, age 80, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 0.8
2198 Male, age 80, both hemispheres 1.7
2196 Female, age 79, unknown 1.4
2392 Female, age 94, both hemispheres 1.2
2568 Male, age 61, both hemispheres 1.1
1956 Male, age 74, unknown 0.8
2284 Female, age 91, both hemispheres 0.6
2491 Male, age 75, both hemispheres 0.5
2645 Female, age 72, unknown 0.2
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.4
2395 Male, age 75, both hemispheres 0.7
1996 Male, age 80, right hemisphere 0.6
2772 Female, age 79, unknown 0.5
2567 Female, age 72, unknown 0.1
2646 Male, age 61, right hemisphere 0.0
Globus pallidus, internus
nTPM: 0.2
2483 Female, age 94, right hemisphere 0.8
2287 Male, age 75, right hemisphere 0.5
2778 Female, age 91, both hemispheres 0.2
2037 Male, age 80, right hemisphere 0.1
1818 Male, age 74, unknown 0.0
2111 Female, age 85, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
Nucleus accumbens
nTPM: 0.4
1856 Female, age 91, right hemisphere 0.7
2698 Female, age 72, unknown 0.7
2286 Male, age 75, left hemisphere 0.6
2391 Female, age 94, left hemisphere 0.6
1783 Male, age 74, unknown 0.4
2824 Male, age 61, right hemisphere 0.4
2732 Male, age 80, right hemisphere 0.1
1806 Female, age 85, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.2
2484 Female, age 94, left hemisphere 0.6
2393 Male, age 80, right hemisphere 0.4
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 1.0
1812 Female, age 91, both hemispheres 2.2
2029 Male, age 61, right hemisphere 0.9
2775 Male, age 80, right hemisphere 0.7
2195 Female, age 85, both hemispheres 0.6
1979 Male, age 74, unknown 0.4
Olfactory tubercle
nTPM: 0.7
1846 Male, age 80, right hemisphere 0.8
2487 Female, age 94, left hemisphere 0.8
2856 Male, age 75, right hemisphere 0.8
1998 Female, age 91, both hemispheres 0.5
Putamen
nTPM: 0.2
1937 Female, age 91, right hemisphere 0.7
2647 Male, age 75, left hemisphere 0.4
2466 Female, age 79, unknown 0.2
2482 Female, age 94, left hemisphere 0.2
1829 Male, age 74, unknown 0.1
1838 Male, age 80, right hemisphere 0.1
2489 Female, age 72, unknown 0.0
Septal nuclei
nTPM: 0.8
2009 Female, age 91, both hemispheres 2.1
2031 Female, age 72, unknown 1.2
2629 Female, age 94, right hemisphere 0.9
2394 Male, age 61, left hemisphere 0.8
1960 Male, age 74, unknown 0.5
2199 Male, age 80, right hemisphere 0.2
2059 Female, age 85, both hemispheres 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.3
Samples: 246

Max nTPM: 29.0
Min nTPM: 0.0
Std nTPM: 7.2
Median nTPM: 8.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 29.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 28.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 25.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 25.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 24.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 24.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 24.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 23.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 23.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 23.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 23.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.3
Samples: 246

Max nTPM: 36.5
Min nTPM: 0.0
Std nTPM: 8.4
Median nTPM: 12.9
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 36.5
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 35.1
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 33.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 33.5
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 31.2
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 31.0
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 30.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 29.8
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 29.6
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 28.4
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 26.2
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Brain - Putamen (basal ganglia)
Average nTPM: 9.9
Samples: 205

Max nTPM: 36.8
Min nTPM: 0.0
Std nTPM: 7.1
Median nTPM: 8.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 36.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 32.3
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 29.8
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 29.6
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 29.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 28.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 26.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 26.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 25.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 25.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 24.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 44.2
FF:10164-103B2 76 years, female 44.2
Globus pallidus
Scaled Tags Per Million: 53.0
FF:10175-103C4 60 years, female 65.5
FF:10161-103A8 76 years, female 40.6
Nucleus accumbens
Scaled Tags Per Million: 30.1
FF:10037-101F1 23-56 years, mixed 30.1
Putamen
Scaled Tags Per Million: 39.6
FF:10176-103C5 60 years, female 39.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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