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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:30.7 nTPM
HPA:30.7 nTPM
FANTOM5:98.5 Scaled Tags Per Million

THALAMUS - HPA Brain RNA-seq
Max nTPM 30.7
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 21.8
2396 Male, age 61, right hemisphere 24.1
2032 Female, age 42, unknown 23.3
2497 Male, age 66, unknown 18.0
Centromedial thalamic nucleus
nTPM: 21.0
2401 Male, age 76, right hemisphere 21.6
2279 Female, age 85, left hemisphere 20.3
Habenula
nTPM: 15.6
2252 Male, age 62, unknown 16.6
2203 Male, age 61, left hemisphere 15.8
1957 Male, age 80, both hemispheres 15.7
2276 Male, age 66, unknown 14.5
Lateral geniculate body
nTPM: 27.8
2575 Female, age 94, right hemisphere 43.9
2841 Male, age 80, both hemispheres 34.6
2106 Female, age 67, right hemisphere 33.1
2035 Female, age 72, unknown 27.1
1953 Male, age 62, unknown 24.2
2399 Male, age 61, left hemisphere 22.0
2659 Male, age 66, unknown 21.1
2857 Male, age 74, right hemisphere 16.9
Lateral thalamic nuclei
nTPM: 22.1
2765 Female, age 67, both hemispheres 29.5
2573 Female, age 94, left hemisphere 25.4
2577 Male, age 74, both hemispheres 22.1
2661 Female, age 72, unknown 18.4
1903 Male, age 76, left hemisphere 15.3
Medial dorsal thalamic nucleus
nTPM: 16.7
2660 Female, age 72, unknown 20.9
1859 Male, age 76, both hemispheres 18.5
1810 Male, age 48, unknown 17.3
1971 Male, age 61, right hemisphere 17.2
1930 Female, age 42, unknown 17.0
2576 Male, age 74, both hemispheres 17.0
2402 Female, age 67, both hemispheres 16.7
2572 Female, age 94, right hemisphere 16.5
2498 Male, age 66, unknown 15.9
2492 Male, age 75, right hemisphere 15.7
2026 Male, age 62, unknown 15.1
2283 Male, age 80, right hemisphere 14.9
2039 Female, age 72, unknown 14.0
Medial geniculate body
nTPM: 18.4
2571 Male, age 75, right hemisphere 21.4
2217 Female, age 72, unknown 19.7
2657 Male, age 74, right hemisphere 19.4
2207 Male, age 80, right hemisphere 18.5
2650 Female, age 94, left hemisphere 18.1
2049 Male, age 76, both hemispheres 17.4
1811 Female, age 42, unknown 14.3
Nucleus reuniens
nTPM: 24.2
2210 Female, age 85, left hemisphere 31.0
2205 Male, age 80, left hemisphere 24.4
2212 Female, age 67, left hemisphere 17.3
Nucleus rhomboideus
nTPM: 19.3
2280 Female, age 85, left hemisphere 27.6
2213 Female, age 67, left hemisphere 15.7
2206 Male, age 80, both hemispheres 14.8
Posterior thalamic nucleus
nTPM: 16.7
2266 Male, age 76, right hemisphere 21.2
2649 Female, age 94, both hemispheres 17.8
2495 Female, age 67, right hemisphere 14.2
2655 Male, age 74, right hemisphere 13.8
Pulvinar
nTPM: 20.4
2398 Male, age 61, left hemisphere 27.0
1972 Male, age 62, unknown 26.0
1932 Male, age 80, right hemisphere 25.4
1899 Female, age 42, unknown 19.8
2724 Male, age 74, right hemisphere 18.4
1929 Male, age 48, unknown 18.2
2214 Male, age 76, right hemisphere 17.9
2496 Female, age 67, right hemisphere 17.4
2499 Male, age 66, unknown 17.3
2582 Female, age 72, unknown 16.3
Subthalamic nucleus
nTPM: 30.7
2275 Male, age 66, unknown 43.9
2124 Male, age 62, unknown 41.4
2056 Female, age 72, unknown 36.8
2658 Male, age 74, both hemispheres 30.5
2282 Male, age 61, both hemispheres 29.2
2216 Male, age 48, unknown 26.7
2779 Female, age 42, unknown 22.7
2406 Female, age 72, unknown 14.0
Ventral posterolateral thalamic nucleus
nTPM: 24.8
2740 Male, age 76, right hemisphere 33.1
2570 Male, age 75, right hemisphere 28.0
2397 Male, age 61, right hemisphere 25.2
2581 Female, age 72, unknown 24.4
2578 Male, age 74, both hemispheres 22.5
2197 Male, age 80, both hemispheres 15.7
Ventral posteromedial thalamic nucleus
nTPM: 21.1
2281 Male, age 75, right hemisphere 31.3
2653 Male, age 74, both hemispheres 23.5
2202 Male, age 61, left hemisphere 18.3
2127 Male, age 76, right hemisphere 17.2
2758 Male, age 80, both hemispheres 15.4
Ventral thalamic nuclei
nTPM: 22.6
2858 Female, age 72, unknown 33.6
2291 Female, age 72, unknown 25.0
1845 Male, age 48, unknown 23.8
2580 Male, age 66, unknown 23.8
1860 Male, age 76, both hemispheres 22.2
2652 Male, age 74, left hemisphere 22.2
2204 Male, age 80, both hemispheres 19.2
1912 Female, age 42, unknown 17.0
2285 Male, age 62, unknown 16.9
Ventromedial nucleus
nTPM: 12.7
1822 Female, age 42, unknown 12.9
1982 Female, age 72, unknown 12.5
Zona incerta
nTPM: 23.3
2822 Male, age 74, right hemisphere 35.2
2215 Male, age 66, unknown 29.0
2403 Male, age 62, unknown 19.2
2663 Female, age 72, unknown 16.7
2208 Male, age 80, right hemisphere 16.5

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 98.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 98.5
FF:10154-103A1 76 years, female 98.5

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