BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:54.6 nTPM
HPA:54.6 nTPM
GTEx:57.6 nTPM
FANTOM5:43.8 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA022961Antibody HPA024457
Glial cells HighHigh
Neuronal cells Not detectedLow



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 54.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 53.0
2846 Female, age 79, unknown 57.3
2288 Male, age 75, left hemisphere 54.0
1857 Female, age 85, left hemisphere 52.7
1854 Male, age 80, left hemisphere 52.6
2290 Female, age 72, unknown 52.6
2481 Female, age 94, left hemisphere 52.6
1781 Male, age 74, unknown 52.2
2289 Male, age 61, right hemisphere 50.0
Claustrum
nTPM: 51.1
1956 Male, age 74, unknown 52.9
2198 Male, age 80, both hemispheres 51.7
2645 Female, age 72, unknown 51.7
2392 Female, age 94, both hemispheres 51.4
2568 Male, age 61, both hemispheres 51.1
2491 Male, age 75, both hemispheres 50.8
2196 Female, age 79, unknown 50.5
2292 Female, age 85, both hemispheres 50.2
2284 Female, age 91, both hemispheres 49.9
Globus pallidus, externus
nTPM: 54.6
2772 Female, age 79, unknown 58.3
1996 Male, age 80, right hemisphere 56.6
2395 Male, age 75, both hemispheres 55.8
2646 Male, age 61, right hemisphere 51.8
2567 Female, age 72, unknown 50.4
Globus pallidus, internus
nTPM: 54.0
2287 Male, age 75, right hemisphere 58.4
1818 Male, age 74, unknown 56.1
2037 Male, age 80, right hemisphere 55.1
2483 Female, age 94, right hemisphere 55.1
2778 Female, age 91, both hemispheres 53.8
2111 Female, age 85, right hemisphere 50.0
2566 Female, age 72, unknown 49.8
Nucleus accumbens
nTPM: 52.0
2698 Female, age 72, unknown 54.5
2286 Male, age 75, left hemisphere 54.3
1856 Female, age 91, right hemisphere 53.7
1806 Female, age 85, left hemisphere 51.9
1783 Male, age 74, unknown 51.3
2732 Male, age 80, right hemisphere 51.0
2391 Female, age 94, left hemisphere 50.9
2824 Male, age 61, right hemisphere 48.4
Nucleus basalis of Meynert
nTPM: 52.4
2821 Male, age 75, both hemispheres 53.5
2569 Male, age 61, both hemispheres 53.0
2484 Female, age 94, left hemisphere 52.0
2393 Male, age 80, right hemisphere 51.2
Nucleus of the diagonal band
nTPM: 51.7
1812 Female, age 91, both hemispheres 54.8
2775 Male, age 80, right hemisphere 52.9
2195 Female, age 85, both hemispheres 51.9
2029 Male, age 61, right hemisphere 50.6
1979 Male, age 74, unknown 48.4
Olfactory tubercle
nTPM: 52.6
1846 Male, age 80, right hemisphere 52.9
1998 Female, age 91, both hemispheres 52.7
2856 Male, age 75, right hemisphere 52.4
2487 Female, age 94, left hemisphere 52.3
Putamen
nTPM: 52.6
1838 Male, age 80, right hemisphere 53.6
2482 Female, age 94, left hemisphere 53.5
2466 Female, age 79, unknown 53.1
1937 Female, age 91, right hemisphere 52.7
2489 Female, age 72, unknown 52.5
2647 Male, age 75, left hemisphere 51.7
1829 Male, age 74, unknown 50.9
Septal nuclei
nTPM: 51.2
1960 Male, age 74, unknown 53.6
2031 Female, age 72, unknown 52.8
2009 Female, age 91, both hemispheres 52.5
2629 Female, age 94, right hemisphere 51.1
2059 Female, age 85, both hemispheres 49.7
2199 Male, age 80, right hemisphere 49.6
2394 Male, age 61, left hemisphere 49.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 57.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 49.3
Samples: 246

Max nTPM: 103.5
Min nTPM: 20.6
Std nTPM: 12.2
Median nTPM: 47.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 103.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 86.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 85.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 84.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 81.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 80.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 79.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 79.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 76.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 75.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 74.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 50.6
Samples: 246

Max nTPM: 106.4
Min nTPM: 21.7
Std nTPM: 12.4
Median nTPM: 48.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 106.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 98.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 94.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 88.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 83.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 81.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 79.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 78.5
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 74.3
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 74.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 73.8
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Brain - Putamen (basal ganglia)
Average nTPM: 57.6
Samples: 205

Max nTPM: 108.6
Min nTPM: 22.6
Std nTPM: 11.5
Median nTPM: 56.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 108.6
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 82.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 82.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 81.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 80.7
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 79.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 78.4
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 76.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 76.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 75.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 75.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 40.9
FF:10164-103B2 76 years, female 40.9
Globus pallidus
Scaled Tags Per Million: 35.3
FF:10175-103C4 60 years, female 35.5
FF:10161-103A8 76 years, female 35.2
Nucleus accumbens
Scaled Tags Per Million: 43.8
FF:10037-101F1 23-56 years, mixed 43.8
Putamen
Scaled Tags Per Million: 41.1
FF:10176-103C5 60 years, female 41.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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