MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:54.0 nTPM
HPA:54.0 nTPM
GTEx:55.8 nTPM
FANTOM5:36.4 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.1
2019 Male, age 18, unknown 53.7
1870 Female, age 42, unknown 53.3
1827 Male, age 72, unknown 52.7
2666 Male, age 74, left hemisphere 52.5
2828 Female, age 72, unknown 52.3
1833 Male, age 53, unknown 52.2
2411 Female, age 72, unknown 52.1
2219 Male, age 76, both hemispheres 51.5
1830 Male, age 51, unknown 51.0
2586 Male, age 75, left hemisphere 49.8
Dorsal raphe nucleus
nTPM: 51.8
2298 Female, age 72, unknown 53.1
2016 Female, age 72, unknown 52.4
2750 Male, age 76, both hemispheres 52.0
1828 Male, age 53, unknown 51.5
2047 Male, age 72, unknown 50.0
Inferior colliculus
nTPM: 52.0
2849 Male, age 72, unknown 53.3
1848 Female, age 42, unknown 53.0
2097 Female, age 72, unknown 52.2
1890 Male, age 53, unknown 49.7
Median raphe nucleus
nTPM: 51.7
2220 Male, age 76, midline 51.7
Pedunculopontine tegmental nucleus
nTPM: 54.0
2338 Male, age 61, both hemispheres 55.7
2334 Male, age 80, both hemispheres 54.5
1921 Female, age 85, both hemispheres 51.9
Periaquaductal grey, anterior
nTPM: 52.7
2502 Female, age 75, unknown 54.2
1947 Male, age 18, unknown 52.4
1795 Male, age 51, unknown 51.5
Periaquaductal grey, dorsal
nTPM: 51.1
2850 Male, age 76, both hemispheres 53.0
1840 Male, age 53, unknown 52.1
2464 Female, age 72, unknown 49.7
1831 Male, age 72, unknown 49.4
Periaquaductal grey, lateral
nTPM: 51.4
2272 Male, age 74, both hemispheres 52.6
2053 Male, age 18, unknown 51.1
2140 Male, age 76, both hemispheres 50.3
Pretectal area
nTPM: 52.8
2007 Male, age 72, unknown 55.4
1817 Female, age 42, unknown 54.7
1944 Female, age 72, unknown 54.2
1816 Male, age 51, unknown 53.7
1815 Male, age 53, unknown 53.5
2224 Female, age 72, unknown 52.5
2825 Male, age 18, unknown 51.7
2273 Male, age 74, both hemispheres 51.6
2316 Male, age 76, right hemisphere 51.4
2667 Female, age 75, unknown 51.4
2407 Male, age 75, both hemispheres 50.8
Red nucleus
nTPM: 53.5
1865 Male, age 51, unknown 55.4
1821 Female, age 72, unknown 54.7
2503 Female, age 72, unknown 54.7
2785 Male, age 18, unknown 54.6
1954 Female, age 42, unknown 54.3
1904 Male, age 53, unknown 54.1
2227 Male, age 72, unknown 54.1
2725 Female, age 75, unknown 53.8
2769 Male, age 72, unknown 52.8
2823 Male, age 76, right hemisphere 52.0
2588 Male, age 74, left hemisphere 51.1
2584 Male, age 75, left hemisphere 50.8
Substantia nigra
nTPM: 52.0
1889 Female, age 72, unknown 55.1
2665 Male, age 74, both hemispheres 54.3
1851 Male, age 51, unknown 52.8
1916 Female, age 42, unknown 52.5
2583 Male, age 75, right hemisphere 52.5
2699 Male, age 18, unknown 51.8
1941 Male, age 53, unknown 51.1
2241 Male, age 72, unknown 50.6
2590 Female, age 75, unknown 50.6
2409 Female, age 72, unknown 48.2
Superior colliculus
nTPM: 51.9
1895 Male, age 76, right hemisphere 54.7
1839 Male, age 51, unknown 53.0
1796 Male, age 53, unknown 52.7
2668 Female, age 75, unknown 52.6
1995 Male, age 72, unknown 52.4
1913 Female, age 42, unknown 51.9
2587 Male, age 74, left hemisphere 51.8
2087 Female, age 72, unknown 51.7
2261 Male, age 18, unknown 50.8
2664 Male, age 75, both hemispheres 47.4
Ventral tegmental area
nTPM: 51.4
1915 Female, age 42, unknown 53.4
2410 Female, age 72, unknown 53.4
2021 Male, age 53, unknown 51.3
2223 Female, age 72, unknown 50.6
2218 Male, age 76, both hemispheres 50.4
1942 Male, age 51, unknown 49.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.8
Samples: 139

Max nTPM: 138.5
Min nTPM: 32.0
Std nTPM: 13.8
Median nTPM: 54.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 138.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 102.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 98.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 96.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 83.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 78.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 77.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 75.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 74.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 74.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 73.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.4
FF:10158-103A5 76 years, female 36.4

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The Human Protein Atlas

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