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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:99.4 nTPM
HPA:99.4 nTPM
GTEx:123.8 nTPM
FANTOM5:58.5 Scaled Tags Per Million
Pig:145.1 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 99.4
Sample id Sample description nTPM
Amygdala
nTPM: 70.0
2814 Male, age 76, right hemisphere 148.3
1987 Female, age 91, left hemisphere 87.4
2517 Female, age 94, left hemisphere 50.9
2514 Male, age 75, right hemisphere 33.4
2695 Female, age 67, right hemisphere 30.1
Basal amygdala
nTPM: 55.7
1955 Male, age 76, both hemispheres 89.5
2243 Female, age 91, right hemisphere 70.2
2685 Female, age 94, left hemisphere 59.4
2110 Male, age 80, left hemisphere 53.5
2609 Male, age 75, right hemisphere 40.0
2827 Female, age 67, right hemisphere 21.4
Central amygdala
nTPM: 87.6
1905 Male, age 76, both hemispheres 149.6
2515 Male, age 75, right hemisphere 82.1
2239 Male, age 80, left hemisphere 79.5
2826 Female, age 94, left hemisphere 65.5
2701 Female, age 91, right hemisphere 61.4
Corticomedial amygdala
nTPM: 61.2
2242 Female, age 91, right hemisphere 86.3
2240 Male, age 76, both hemispheres 82.6
2829 Male, age 80, left hemisphere 64.2
2429 Female, age 94, left hemisphere 58.3
2535 Female, age 67, right hemisphere 42.0
2428 Male, age 75, right hemisphere 34.1
Lateral amygdala
nTPM: 62.0
1883 Male, age 76, both hemispheres 128.9
2534 Female, age 94, left hemisphere 90.6
2255 Female, age 91, right hemisphere 57.2
2256 Male, age 80, left hemisphere 48.7
2516 Male, age 75, right hemisphere 34.0
2830 Female, age 67, right hemisphere 12.8
Stria terminalis, bed nucleus
nTPM: 99.4
1974 Female, age 91, both hemispheres 132.0
2486 Female, age 94, both hemispheres 90.3
2201 Male, age 74, unknown 75.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 123.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 123.8
Samples: 152

Max nTPM: 594.6
Min nTPM: 22.6
Std nTPM: 66.9
Median nTPM: 107.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 594.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 298.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 282.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 273.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 252.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 247.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 244.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 237.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 229.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 226.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 225.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 225.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 211.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 205.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 204.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 203.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 200.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 199.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 193.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 184.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 183.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 180.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 178.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 175.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 167.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 166.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 165.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 165.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 165.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 163.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 163.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 163.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 160.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 158.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 158.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 157.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 156.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 155.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 154.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 153.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 152.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 149.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 148.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 146.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 145.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 145.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 145.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 144.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 142.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 140.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 139.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 138.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 137.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 132.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 130.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 130.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 129.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 127.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 124.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 124.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 124.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 122.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 120.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 117.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 116.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 116.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 116.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 115.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 115.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 114.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 112.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 110.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 109.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 108.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 108.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 108.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 106.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 106.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 106.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 105.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 104.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 102.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 102.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 102.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 102.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 101.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 101.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 98.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 98.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 98.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 98.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 98.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 97.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 97.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 97.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 96.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 95.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 95.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 92.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 92.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 92.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 91.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 91.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 90.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 90.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 89.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 89.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 87.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 87.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 86.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 84.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 84.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 84.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 84.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 82.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 82.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 81.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 81.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 80.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 79.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 79.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 78.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 77.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 75.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 74.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 73.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 72.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 72.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 70.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 70.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 70.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 67.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 66.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 64.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 62.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 61.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 60.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 57.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 55.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 55.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 53.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 50.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 50.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 49.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 47.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 42.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 40.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 40.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 38.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 30.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 24.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 22.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 58.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 58.5
FF:10151-102I7 76 years, female 58.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 145.1
Pig sample Sample description nTPM
Amygdala
nTPM: 145.1
Samples: 4

Max nTPM: 226.7
Min nTPM: 83.8
Sample A Female 226.7
Sample B Female 83.8
Sample C Male 131.1
Sample D Male 138.6

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