BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:39.9 nTPM
HPA:39.9 nTPM
GTEx:62.1 nTPM
FANTOM5:49.3 Scaled Tags Per Million
Pig:82.9 nTPM
Mouse:66.8 nTPM
Allen mouse:2.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA022853Antibody HPA023043
Glial cells MediumLow
Neuronal cells HighHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.5
2481 Female, age 94, left hemisphere 41.6
1857 Female, age 85, left hemisphere 37.6
1781 Male, age 74, unknown 37.4
1854 Male, age 80, left hemisphere 37.2
2288 Male, age 75, left hemisphere 37.2
2289 Male, age 61, right hemisphere 37.1
2846 Female, age 79, unknown 36.9
2290 Female, age 72, unknown 34.9
Claustrum
nTPM: 34.9
2198 Male, age 80, both hemispheres 37.0
2568 Male, age 61, both hemispheres 36.2
2284 Female, age 91, both hemispheres 36.1
2491 Male, age 75, both hemispheres 35.8
1956 Male, age 74, unknown 34.9
2196 Female, age 79, unknown 34.6
2292 Female, age 85, both hemispheres 34.6
2645 Female, age 72, unknown 33.3
2392 Female, age 94, both hemispheres 31.8
Globus pallidus, externus
nTPM: 39.9
2772 Female, age 79, unknown 44.5
1996 Male, age 80, right hemisphere 41.9
2646 Male, age 61, right hemisphere 41.0
2395 Male, age 75, both hemispheres 36.9
2567 Female, age 72, unknown 35.2
Globus pallidus, internus
nTPM: 38.9
2483 Female, age 94, right hemisphere 43.8
2287 Male, age 75, right hemisphere 40.9
2037 Male, age 80, right hemisphere 39.3
1818 Male, age 74, unknown 39.2
2778 Female, age 91, both hemispheres 38.6
2566 Female, age 72, unknown 35.5
2111 Female, age 85, right hemisphere 34.8
Nucleus accumbens
nTPM: 37.1
1856 Female, age 91, right hemisphere 39.4
2286 Male, age 75, left hemisphere 38.5
1806 Female, age 85, left hemisphere 37.9
1783 Male, age 74, unknown 37.5
2698 Female, age 72, unknown 36.3
2824 Male, age 61, right hemisphere 36.3
2391 Female, age 94, left hemisphere 35.9
2732 Male, age 80, right hemisphere 34.8
Nucleus basalis of Meynert
nTPM: 37.7
2569 Male, age 61, both hemispheres 42.6
2484 Female, age 94, left hemisphere 37.3
2393 Male, age 80, right hemisphere 35.9
2821 Male, age 75, both hemispheres 35.1
Nucleus of the diagonal band
nTPM: 36.6
2775 Male, age 80, right hemisphere 38.9
1812 Female, age 91, both hemispheres 38.8
1979 Male, age 74, unknown 35.3
2195 Female, age 85, both hemispheres 35.1
2029 Male, age 61, right hemisphere 34.9
Olfactory tubercle
nTPM: 36.3
1998 Female, age 91, both hemispheres 38.6
2856 Male, age 75, right hemisphere 36.5
1846 Male, age 80, right hemisphere 36.3
2487 Female, age 94, left hemisphere 33.7
Putamen
nTPM: 36.3
2647 Male, age 75, left hemisphere 37.5
1937 Female, age 91, right hemisphere 37.4
2466 Female, age 79, unknown 37.4
2482 Female, age 94, left hemisphere 37.4
1838 Male, age 80, right hemisphere 36.3
1829 Male, age 74, unknown 35.2
2489 Female, age 72, unknown 32.6
Septal nuclei
nTPM: 35.9
1960 Male, age 74, unknown 39.7
2031 Female, age 72, unknown 39.2
2009 Female, age 91, both hemispheres 35.3
2059 Female, age 85, both hemispheres 35.3
2199 Male, age 80, right hemisphere 35.3
2394 Male, age 61, left hemisphere 33.5
2629 Female, age 94, right hemisphere 32.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 62.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 54.4
Samples: 246

Max nTPM: 121.7
Min nTPM: 25.0
Std nTPM: 14.7
Median nTPM: 53.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 121.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 110.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 104.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 103.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 96.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 96.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 92.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 90.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 87.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 83.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 82.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 55.5
Samples: 246

Max nTPM: 112.7
Min nTPM: 21.5
Std nTPM: 14.3
Median nTPM: 54.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 112.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 103.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 103.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 102.5
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 97.4
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 95.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 90.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 88.1
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 86.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 83.4
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 83.3
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Brain - Putamen (basal ganglia)
Average nTPM: 62.1
Samples: 205

Max nTPM: 123.3
Min nTPM: 24.8
Std nTPM: 14.0
Median nTPM: 60.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 123.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 111.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 99.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 96.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 93.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 91.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 88.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 87.1
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 86.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 84.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 84.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.9
FF:10164-103B2 76 years, female 32.9
Globus pallidus
Scaled Tags Per Million: 49.3
FF:10175-103C4 60 years, female 64.7
FF:10161-103A8 76 years, female 33.9
Nucleus accumbens
Scaled Tags Per Million: 36.1
FF:10037-101F1 23-56 years, mixed 36.1
Putamen
Scaled Tags Per Million: 41.1
FF:10176-103C5 60 years, female 41.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 82.9
Pig sample Sample description nTPM
Caudate
nTPM: 66.9
Samples: 4

Max nTPM: 80.2
Min nTPM: 56.3
Sample A Female 56.7
Sample B Female 74.3
Sample C Male 80.2
Sample D Male 56.3
Putamen
nTPM: 82.9
Samples: 4

Max nTPM: 112.9
Min nTPM: 63.5
Sample A Female 75.8
Sample B Female 63.5
Sample C Male 112.9
Sample D Male 79.3
Septum
nTPM: 63.9
Samples: 4

Max nTPM: 71.2
Min nTPM: 56.6
Sample A Female 71.2
Sample B Female 66.8
Sample C Male 60.8
Sample D Male 56.6
Ventral pallidum
nTPM: 69.0
Samples: 4

Max nTPM: 85.2
Min nTPM: 55.5
Sample A Female 55.5
Sample B Female 85.2
Sample C Male 77.2
Sample D Male 58.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 66.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 58.2
Samples: 4

Max nTPM: 67.7
Min nTPM: 54.5
Sample A Male 54.5
Sample B Male 67.7
Sample C Female 55.3
Sample D Female 55.3
Septum
nTPM: 59.0
Samples: 4

Max nTPM: 60.0
Min nTPM: 57.3
Sample A Male 59.3
Sample B Male 59.5
Sample C Female 60.0
Sample D Female 57.3
Ventral forebrain
nTPM: 66.8
Samples: 4

Max nTPM: 72.0
Min nTPM: 60.2
Sample A Male 71.7
Sample B Male 60.2
Sample C Female 72.0
Sample D Female 63.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.7
70743841 Antisense, RP_050725_01_G03, Mouse strain C57BL/6J (56 days, male) 2.5
633293 Antisense, RP_040907_02_E11, Mouse strain C57BL/6J (56 days, male) 0.9
Pallidum
Expression energy: 2.7
70743841 Antisense, RP_050725_01_G03, Mouse strain C57BL/6J (56 days, male) 3.7
633293 Antisense, RP_040907_02_E11, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

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