BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:16.0 nTPM
HPA:16.0 nTPM
GTEx:17.3 nTPM
FANTOM5:13.2 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA049905
Glial cells Medium
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.7
2288 Male, age 75, left hemisphere 16.8
1857 Female, age 85, left hemisphere 16.1
2290 Female, age 72, unknown 16.0
2846 Female, age 79, unknown 15.8
2481 Female, age 94, left hemisphere 15.5
1854 Male, age 80, left hemisphere 15.4
1781 Male, age 74, unknown 15.1
2289 Male, age 61, right hemisphere 14.9
Claustrum
nTPM: 15.2
2491 Male, age 75, both hemispheres 16.5
2392 Female, age 94, both hemispheres 15.8
2292 Female, age 85, both hemispheres 15.6
2198 Male, age 80, both hemispheres 15.4
1956 Male, age 74, unknown 15.2
2284 Female, age 91, both hemispheres 15.1
2196 Female, age 79, unknown 14.8
2568 Male, age 61, both hemispheres 14.4
2645 Female, age 72, unknown 14.2
Globus pallidus, externus
nTPM: 15.4
2395 Male, age 75, both hemispheres 15.8
2567 Female, age 72, unknown 15.8
2772 Female, age 79, unknown 15.4
2646 Male, age 61, right hemisphere 15.2
1996 Male, age 80, right hemisphere 15.0
Globus pallidus, internus
nTPM: 15.5
2287 Male, age 75, right hemisphere 17.7
2483 Female, age 94, right hemisphere 17.0
2778 Female, age 91, both hemispheres 15.5
2111 Female, age 85, right hemisphere 15.2
2566 Female, age 72, unknown 15.2
1818 Male, age 74, unknown 14.0
2037 Male, age 80, right hemisphere 13.9
Nucleus accumbens
nTPM: 16.0
2286 Male, age 75, left hemisphere 16.9
1783 Male, age 74, unknown 16.4
1806 Female, age 85, left hemisphere 16.2
1856 Female, age 91, right hemisphere 16.2
2824 Male, age 61, right hemisphere 16.0
2698 Female, age 72, unknown 15.6
2391 Female, age 94, left hemisphere 15.5
2732 Male, age 80, right hemisphere 15.0
Nucleus basalis of Meynert
nTPM: 15.2
2484 Female, age 94, left hemisphere 16.1
2569 Male, age 61, both hemispheres 15.4
2821 Male, age 75, both hemispheres 14.8
2393 Male, age 80, right hemisphere 14.7
Nucleus of the diagonal band
nTPM: 15.6
1979 Male, age 74, unknown 16.9
2195 Female, age 85, both hemispheres 15.7
1812 Female, age 91, both hemispheres 15.3
2775 Male, age 80, right hemisphere 15.3
2029 Male, age 61, right hemisphere 15.0
Olfactory tubercle
nTPM: 15.0
1998 Female, age 91, both hemispheres 15.7
1846 Male, age 80, right hemisphere 15.2
2487 Female, age 94, left hemisphere 14.6
2856 Male, age 75, right hemisphere 14.6
Putamen
nTPM: 15.4
1937 Female, age 91, right hemisphere 16.1
2466 Female, age 79, unknown 16.0
1838 Male, age 80, right hemisphere 15.7
2482 Female, age 94, left hemisphere 15.5
2647 Male, age 75, left hemisphere 15.5
1829 Male, age 74, unknown 14.8
2489 Female, age 72, unknown 14.5
Septal nuclei
nTPM: 15.0
2031 Female, age 72, unknown 16.3
1960 Male, age 74, unknown 16.2
2059 Female, age 85, both hemispheres 15.2
2199 Male, age 80, right hemisphere 14.9
2009 Female, age 91, both hemispheres 14.7
2394 Male, age 61, left hemisphere 14.1
2629 Female, age 94, right hemisphere 13.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 17.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.9
Samples: 246

Max nTPM: 22.6
Min nTPM: 8.7
Std nTPM: 2.4
Median nTPM: 15.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 22.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 22.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 21.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 21.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 21.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 21.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 21.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 21.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 20.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 20.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 20.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.8
Samples: 246

Max nTPM: 23.1
Min nTPM: 9.7
Std nTPM: 2.3
Median nTPM: 16.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 23.1
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 23.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 22.7
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 22.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 22.0
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 21.4
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 21.3
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 21.1
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 21.0
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 21.0
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 20.7
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Brain - Putamen (basal ganglia)
Average nTPM: 17.3
Samples: 205

Max nTPM: 26.6
Min nTPM: 13.1
Std nTPM: 2.4
Median nTPM: 17.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 26.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 26.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 24.8
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 24.5
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 23.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 22.9
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 22.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 22.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 22.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 21.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 21.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 9.8
FF:10164-103B2 76 years, female 9.8
Globus pallidus
Scaled Tags Per Million: 7.2
FF:10175-103C4 60 years, female 8.6
FF:10161-103A8 76 years, female 5.7
Nucleus accumbens
Scaled Tags Per Million: 11.0
FF:10037-101F1 23-56 years, mixed 11.0
Putamen
Scaled Tags Per Million: 13.2
FF:10176-103C5 60 years, female 13.2

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The Human Protein Atlas

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