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ZNF488
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:20.4 nTPM
HPA:20.4 nTPM
GTEx:63.9 nTPM
FANTOM5:138.6 Scaled Tags Per Million
Pig:3.5 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 20.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 16.0
2816 Male, age 47, midline 18.6
2194 Female, age 79, both hemispheres 17.7
1981 Female, age 72, midline 16.1
2048 Male, age 55, midline 14.8
2565 Male, age 75, midline 12.9
Cervical spinal cord, dorsal horn
nTPM: 16.9
2296 Male, age 66, both hemispheres 32.6
2173 Female, age 72, unknown 22.2
2069 Male, age 47, both hemispheres 14.9
1877 Male, age 55, unknown 13.8
2721 Male, age 90, both hemispheres 10.1
2297 Male, age 75, both hemispheres 7.7
Cervical spinal cord, ventral horn
nTPM: 20.4
2820 Female, age 79, both hemispheres 24.7
2068 Male, age 55, unknown 22.5
2480 Male, age 75, both hemispheres 22.4
2295 Male, age 66, both hemispheres 17.9
2098 Female, age 72, unknown 17.7
2809 Male, age 90, both hemispheres 17.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 63.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 63.9
Samples: 159

Max nTPM: 168.5
Min nTPM: 5.6
Std nTPM: 28.4
Median nTPM: 59.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 168.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 160.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 154.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 141.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 140.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 121.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 120.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 113.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 109.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 107.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 105.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 105.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 103.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 101.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 99.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 94.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 93.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 93.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 92.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 89.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 88.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 87.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 87.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 87.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 86.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 86.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 86.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 86.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 85.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 85.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 84.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 84.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 82.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 82.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 82.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 81.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 81.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 81.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 81.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 80.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 80.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 80.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 79.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 79.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 78.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 78.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 78.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 78.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 77.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 77.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 76.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 76.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 76.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 74.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 73.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 72.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 72.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 71.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 71.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 70.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 70.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 70.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 69.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 69.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 68.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 67.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 67.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 67.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 66.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 66.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 66.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 65.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 65.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 64.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 64.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 63.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 62.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 61.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 60.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 59.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 59.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 58.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 57.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 57.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 56.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 56.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 56.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 56.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 56.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 55.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 55.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 54.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 54.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 53.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 53.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 53.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 53.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 52.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 52.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 52.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 51.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 51.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 51.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 51.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 51.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 50.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 50.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 49.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 49.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 49.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 49.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 49.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 48.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 48.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 48.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 48.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 47.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 46.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 46.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 45.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 45.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 44.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 44.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 43.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 43.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 43.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 43.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 41.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 39.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 39.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 37.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 37.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 37.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 37.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 36.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 36.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 36.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 35.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 33.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 32.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 30.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 29.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 29.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 28.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 28.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 27.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 27.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 26.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 26.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 23.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 23.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 22.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 20.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 20.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 18.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 16.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 12.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 9.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 5.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 138.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 138.6
FF:10181-103D1 60 years, female 229.5
FF:10159-103A6 76 years, female 47.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 3.0
Samples: 4

Max nTPM: 4.5
Min nTPM: 1.2
Sample A Female 4.5
Sample B Female 2.5
Sample C Male 1.2
Sample D Male 3.7
Ventral spinal cord
nTPM: 3.5
Samples: 4

Max nTPM: 4.9
Min nTPM: 2.7
Sample A Female 4.9
Sample B Female 3.0
Sample C Male 2.7
Sample D Male 3.2

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