MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:88.1 nTPM
HPA:88.1 nTPM
GTEx:79.8 nTPM
FANTOM5:114.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 88.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.6
2019 Male, age 18, unknown 88.6
2586 Male, age 75, left hemisphere 85.2
2411 Female, age 72, unknown 84.6
1827 Male, age 72, unknown 83.5
2666 Male, age 74, left hemisphere 83.5
2219 Male, age 76, both hemispheres 82.9
2828 Female, age 72, unknown 82.9
1830 Male, age 51, unknown 82.2
1833 Male, age 53, unknown 81.9
1870 Female, age 42, unknown 80.8
Dorsal raphe nucleus
nTPM: 84.8
2298 Female, age 72, unknown 88.5
2047 Male, age 72, unknown 86.8
1828 Male, age 53, unknown 85.9
2750 Male, age 76, both hemispheres 81.7
2016 Female, age 72, unknown 81.3
Inferior colliculus
nTPM: 85.3
2097 Female, age 72, unknown 88.5
1890 Male, age 53, unknown 86.3
1848 Female, age 42, unknown 83.5
2849 Male, age 72, unknown 82.8
Median raphe nucleus
nTPM: 88.1
2220 Male, age 76, midline 88.1
Pedunculopontine tegmental nucleus
nTPM: 84.9
1921 Female, age 85, both hemispheres 85.6
2338 Male, age 61, both hemispheres 85.3
2334 Male, age 80, both hemispheres 83.7
Periaquaductal grey, anterior
nTPM: 85.0
1795 Male, age 51, unknown 87.3
2502 Female, age 75, unknown 85.5
1947 Male, age 18, unknown 82.0
Periaquaductal grey, dorsal
nTPM: 82.8
2850 Male, age 76, both hemispheres 84.6
1831 Male, age 72, unknown 83.3
2464 Female, age 72, unknown 81.6
1840 Male, age 53, unknown 81.5
Periaquaductal grey, lateral
nTPM: 86.2
2272 Male, age 74, both hemispheres 90.2
2053 Male, age 18, unknown 84.7
2140 Male, age 76, both hemispheres 83.6
Pretectal area
nTPM: 85.8
1816 Male, age 51, unknown 90.5
2007 Male, age 72, unknown 88.1
1817 Female, age 42, unknown 87.7
1944 Female, age 72, unknown 87.6
2667 Female, age 75, unknown 86.8
2273 Male, age 74, both hemispheres 86.0
1815 Male, age 53, unknown 85.3
2316 Male, age 76, right hemisphere 84.7
2224 Female, age 72, unknown 84.1
2407 Male, age 75, both hemispheres 81.3
2825 Male, age 18, unknown 81.1
Red nucleus
nTPM: 85.6
2785 Male, age 18, unknown 88.3
1821 Female, age 72, unknown 87.2
2823 Male, age 76, right hemisphere 86.8
2769 Male, age 72, unknown 86.7
1954 Female, age 42, unknown 86.0
2503 Female, age 72, unknown 86.0
1865 Male, age 51, unknown 85.8
1904 Male, age 53, unknown 85.1
2725 Female, age 75, unknown 85.1
2227 Male, age 72, unknown 84.2
2588 Male, age 74, left hemisphere 83.3
2584 Male, age 75, left hemisphere 82.2
Substantia nigra
nTPM: 86.1
1916 Female, age 42, unknown 91.5
1889 Female, age 72, unknown 89.9
1851 Male, age 51, unknown 88.4
1941 Male, age 53, unknown 86.3
2699 Male, age 18, unknown 86.1
2409 Female, age 72, unknown 85.9
2590 Female, age 75, unknown 85.0
2665 Male, age 74, both hemispheres 83.4
2241 Male, age 72, unknown 82.9
2583 Male, age 75, right hemisphere 81.6
Superior colliculus
nTPM: 84.4
2087 Female, age 72, unknown 87.9
1796 Male, age 53, unknown 86.7
2261 Male, age 18, unknown 85.9
1913 Female, age 42, unknown 85.1
1995 Male, age 72, unknown 84.7
2587 Male, age 74, left hemisphere 84.6
1895 Male, age 76, right hemisphere 83.8
2668 Female, age 75, unknown 83.5
2664 Male, age 75, both hemispheres 81.4
1839 Male, age 51, unknown 80.0
Ventral tegmental area
nTPM: 87.2
2410 Female, age 72, unknown 90.1
2218 Male, age 76, both hemispheres 88.9
1915 Female, age 42, unknown 87.3
2223 Female, age 72, unknown 87.2
2021 Male, age 53, unknown 85.5
1942 Male, age 51, unknown 84.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.8
Samples: 139

Max nTPM: 163.4
Min nTPM: 34.0
Std nTPM: 25.8
Median nTPM: 76.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 163.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 159.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 154.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 148.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 135.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 132.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 130.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 130.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 123.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 121.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 116.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 114.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 114.0
FF:10158-103A5 76 years, female 114.0

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The Human Protein Atlas

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