BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:4.4 nTPM
HPA:4.4 nTPM
GTEx:11.4 nTPM
FANTOM5:39.1 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA045663Antibody HPA051631
Glial cells Not detectedLow
Neuronal cells MediumHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.5
2481 Female, age 94, left hemisphere 7.4
2288 Male, age 75, left hemisphere 4.3
1781 Male, age 74, unknown 3.2
2290 Female, age 72, unknown 3.2
1854 Male, age 80, left hemisphere 3.0
2846 Female, age 79, unknown 2.7
2289 Male, age 61, right hemisphere 2.6
1857 Female, age 85, left hemisphere 2.1
Claustrum
nTPM: 1.7
2196 Female, age 79, unknown 3.0
2292 Female, age 85, both hemispheres 3.0
2198 Male, age 80, both hemispheres 2.8
2491 Male, age 75, both hemispheres 2.6
1956 Male, age 74, unknown 2.1
2568 Male, age 61, both hemispheres 1.9
2284 Female, age 91, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
2645 Female, age 72, unknown 0.0
Globus pallidus, externus
nTPM: 3.5
1996 Male, age 80, right hemisphere 5.8
2646 Male, age 61, right hemisphere 4.2
2567 Female, age 72, unknown 3.3
2772 Female, age 79, unknown 3.1
2395 Male, age 75, both hemispheres 1.3
Globus pallidus, internus
nTPM: 4.4
2566 Female, age 72, unknown 6.0
2483 Female, age 94, right hemisphere 5.6
2778 Female, age 91, both hemispheres 5.0
2287 Male, age 75, right hemisphere 4.8
2037 Male, age 80, right hemisphere 3.5
2111 Female, age 85, right hemisphere 3.3
1818 Male, age 74, unknown 2.8
Nucleus accumbens
nTPM: 2.1
2286 Male, age 75, left hemisphere 4.2
2698 Female, age 72, unknown 4.0
2391 Female, age 94, left hemisphere 2.6
2732 Male, age 80, right hemisphere 2.4
1783 Male, age 74, unknown 1.8
1806 Female, age 85, left hemisphere 1.8
1856 Female, age 91, right hemisphere 0.3
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 2.7
2569 Male, age 61, both hemispheres 5.0
2821 Male, age 75, both hemispheres 2.6
2484 Female, age 94, left hemisphere 2.1
2393 Male, age 80, right hemisphere 0.9
Nucleus of the diagonal band
nTPM: 0.4
1979 Male, age 74, unknown 1.7
1812 Female, age 91, both hemispheres 0.4
2029 Male, age 61, right hemisphere 0.0
2195 Female, age 85, both hemispheres 0.0
2775 Male, age 80, right hemisphere 0.0
Olfactory tubercle
nTPM: 0.7
1846 Male, age 80, right hemisphere 2.0
2487 Female, age 94, left hemisphere 0.8
1998 Female, age 91, both hemispheres 0.0
2856 Male, age 75, right hemisphere 0.0
Putamen
nTPM: 2.7
2482 Female, age 94, left hemisphere 8.8
2489 Female, age 72, unknown 4.0
2647 Male, age 75, left hemisphere 2.5
1937 Female, age 91, right hemisphere 1.8
1829 Male, age 74, unknown 1.0
2466 Female, age 79, unknown 1.0
1838 Male, age 80, right hemisphere 0.0
Septal nuclei
nTPM: 1.5
2059 Female, age 85, both hemispheres 3.9
2629 Female, age 94, right hemisphere 3.2
1960 Male, age 74, unknown 1.5
2199 Male, age 80, right hemisphere 1.5
2394 Male, age 61, left hemisphere 0.3
2031 Female, age 72, unknown 0.2
2009 Female, age 91, both hemispheres 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 11.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.4
Samples: 246

Max nTPM: 22.2
Min nTPM: 0.0
Std nTPM: 5.0
Median nTPM: 11.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 22.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 22.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 21.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 21.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 20.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 20.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 20.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 20.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 20.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 19.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 19.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.1
Samples: 246

Max nTPM: 21.8
Min nTPM: 0.0
Std nTPM: 6.0
Median nTPM: 10.9
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 21.8
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 21.5
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 21.4
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 21.1
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 20.9
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 20.6
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 19.6
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 19.4
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 19.3
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 19.3
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 19.2
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Brain - Putamen (basal ganglia)
Average nTPM: 10.4
Samples: 205

Max nTPM: 25.4
Min nTPM: 0.0
Std nTPM: 5.7
Median nTPM: 10.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 25.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 23.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 22.2
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 21.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 20.7
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 20.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 20.2
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 20.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 19.9
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 19.5
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 19.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.2
FF:10164-103B2 76 years, female 22.2
Globus pallidus
Scaled Tags Per Million: 39.1
FF:10175-103C4 60 years, female 59.2
FF:10161-103A8 76 years, female 19.1
Nucleus accumbens
Scaled Tags Per Million: 11.3
FF:10037-101F1 23-56 years, mixed 11.3
Putamen
Scaled Tags Per Million: 20.4
FF:10176-103C5 60 years, female 20.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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