BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:14.6 nTPM
HPA:14.6 nTPM
GTEx:0.6 nTPM
FANTOM5:0.7 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA042201
Glial cells High
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.0
1781 Male, age 74, unknown 8.4
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 0.0
1956 Male, age 74, unknown 0.0
2196 Female, age 79, unknown 0.0
2198 Male, age 80, both hemispheres 0.0
2284 Female, age 91, both hemispheres 0.0
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
2491 Male, age 75, both hemispheres 0.0
2568 Male, age 61, both hemispheres 0.0
2645 Female, age 72, unknown 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 2.3
1783 Male, age 74, unknown 12.5
1856 Female, age 91, right hemisphere 5.9
1806 Female, age 85, left hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 14.2
1812 Female, age 91, both hemispheres 19.4
2775 Male, age 80, right hemisphere 17.7
2195 Female, age 85, both hemispheres 17.2
2029 Male, age 61, right hemisphere 16.8
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 8.2
1998 Female, age 91, both hemispheres 29.0
1846 Male, age 80, right hemisphere 2.0
2487 Female, age 94, left hemisphere 1.8
2856 Male, age 75, right hemisphere 0.0
Putamen
nTPM: 1.3
2466 Female, age 79, unknown 9.6
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 14.6
1960 Male, age 74, unknown 44.9
2031 Female, age 72, unknown 42.7
2009 Female, age 91, both hemispheres 14.4
2059 Female, age 85, both hemispheres 0.0
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0
2629 Female, age 94, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.4
Samples: 246

Max nTPM: 3.7
Min nTPM: 0.0
Std nTPM: 0.8
Median nTPM:
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 3.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 3.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 3.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 3.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 3.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 3.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 3.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 3.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 2.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 2.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 2.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.6
Samples: 246

Max nTPM: 5.2
Min nTPM: 0.0
Std nTPM: 1.0
Median nTPM:
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 5.2
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 5.2
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 4.8
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 4.4
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 4.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 3.8
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 3.7
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 3.5
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 3.2
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 3.1
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 3.0
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Brain - Putamen (basal ganglia)
Average nTPM: 0.5
Samples: 205

Max nTPM: 4.7
Min nTPM: 0.0
Std nTPM: 0.9
Median nTPM: 0.0
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 4.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 4.4
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 4.4
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 3.6
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 3.3
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 2.6
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 2.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 2.5
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 2.5
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 2.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 2.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.3
FF:10164-103B2 76 years, female 0.3
Globus pallidus
Scaled Tags Per Million: 0.7
FF:10175-103C4 60 years, female 1.5
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.2
FF:10176-103C5 60 years, female 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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