BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:73.8 nTPM
HPA:73.8 nTPM
GTEx:58.5 nTPM
FANTOM5:85.3 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 73.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 72.5
2481 Female, age 94, left hemisphere 76.1
1857 Female, age 85, left hemisphere 75.8
1854 Male, age 80, left hemisphere 72.9
2290 Female, age 72, unknown 72.4
2846 Female, age 79, unknown 71.7
1781 Male, age 74, unknown 71.4
2288 Male, age 75, left hemisphere 70.9
2289 Male, age 61, right hemisphere 68.8
Claustrum
nTPM: 68.3
2196 Female, age 79, unknown 71.9
1956 Male, age 74, unknown 70.2
2491 Male, age 75, both hemispheres 68.6
2645 Female, age 72, unknown 68.6
2198 Male, age 80, both hemispheres 68.4
2284 Female, age 91, both hemispheres 68.3
2292 Female, age 85, both hemispheres 67.1
2568 Male, age 61, both hemispheres 65.7
2392 Female, age 94, both hemispheres 65.6
Globus pallidus, externus
nTPM: 72.7
2646 Male, age 61, right hemisphere 77.4
1996 Male, age 80, right hemisphere 76.2
2772 Female, age 79, unknown 73.1
2395 Male, age 75, both hemispheres 68.8
2567 Female, age 72, unknown 68.0
Globus pallidus, internus
nTPM: 73.8
2287 Male, age 75, right hemisphere 77.0
2111 Female, age 85, right hemisphere 74.4
2483 Female, age 94, right hemisphere 73.6
1818 Male, age 74, unknown 73.4
2037 Male, age 80, right hemisphere 73.0
2566 Female, age 72, unknown 72.9
2778 Female, age 91, both hemispheres 72.3
Nucleus accumbens
nTPM: 71.6
2698 Female, age 72, unknown 76.5
1856 Female, age 91, right hemisphere 73.6
2286 Male, age 75, left hemisphere 72.2
1806 Female, age 85, left hemisphere 71.9
2391 Female, age 94, left hemisphere 71.5
1783 Male, age 74, unknown 69.8
2732 Male, age 80, right hemisphere 69.0
2824 Male, age 61, right hemisphere 68.3
Nucleus basalis of Meynert
nTPM: 71.4
2569 Male, age 61, both hemispheres 73.8
2821 Male, age 75, both hemispheres 72.5
2393 Male, age 80, right hemisphere 71.5
2484 Female, age 94, left hemisphere 67.8
Nucleus of the diagonal band
nTPM: 68.6
1812 Female, age 91, both hemispheres 70.1
2195 Female, age 85, both hemispheres 69.8
2775 Male, age 80, right hemisphere 69.2
1979 Male, age 74, unknown 68.1
2029 Male, age 61, right hemisphere 65.8
Olfactory tubercle
nTPM: 69.3
2856 Male, age 75, right hemisphere 71.4
1846 Male, age 80, right hemisphere 70.1
2487 Female, age 94, left hemisphere 69.6
1998 Female, age 91, both hemispheres 66.1
Putamen
nTPM: 72.8
2489 Female, age 72, unknown 75.4
2482 Female, age 94, left hemisphere 73.8
2647 Male, age 75, left hemisphere 73.4
1937 Female, age 91, right hemisphere 72.8
2466 Female, age 79, unknown 71.7
1838 Male, age 80, right hemisphere 71.5
1829 Male, age 74, unknown 71.2
Septal nuclei
nTPM: 68.4
2199 Male, age 80, right hemisphere 70.1
2629 Female, age 94, right hemisphere 69.9
1960 Male, age 74, unknown 69.0
2031 Female, age 72, unknown 68.2
2059 Female, age 85, both hemispheres 67.5
2394 Male, age 61, left hemisphere 67.2
2009 Female, age 91, both hemispheres 66.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 58.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 52.1
Samples: 246

Max nTPM: 123.9
Min nTPM: 29.1
Std nTPM: 13.9
Median nTPM: 49.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 123.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 107.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 106.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 101.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 100.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 96.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 91.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 91.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 91.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 85.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 82.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 56.7
Samples: 246

Max nTPM: 245.4
Min nTPM: 30.1
Std nTPM: 19.8
Median nTPM: 52.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 245.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 122.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 121.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 119.9
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 113.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 97.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 94.3
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 92.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 92.1
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 91.6
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 91.2
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Brain - Putamen (basal ganglia)
Average nTPM: 58.5
Samples: 205

Max nTPM: 125.3
Min nTPM: 34.2
Std nTPM: 14.7
Median nTPM: 55.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 125.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 107.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 106.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 100.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 100.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 93.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 93.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 88.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 87.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 86.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 85.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 61.1
FF:10164-103B2 76 years, female 61.1
Globus pallidus
Scaled Tags Per Million: 85.3
FF:10175-103C4 60 years, female 97.0
FF:10161-103A8 76 years, female 73.5
Nucleus accumbens
Scaled Tags Per Million: 65.5
FF:10037-101F1 23-56 years, mixed 65.5
Putamen
Scaled Tags Per Million: 71.0
FF:10176-103C5 60 years, female 71.0

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The Human Protein Atlas

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