BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:0.6 nTPM
HPA:0.6 nTPM
GTEx:10.8 nTPM
FANTOM5:0.1 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.5
1857 Female, age 85, left hemisphere 0.6
2846 Female, age 79, unknown 0.6
1781 Male, age 74, unknown 0.5
1854 Male, age 80, left hemisphere 0.5
2288 Male, age 75, left hemisphere 0.5
2289 Male, age 61, right hemisphere 0.5
2290 Female, age 72, unknown 0.5
2481 Female, age 94, left hemisphere 0.5
Claustrum
nTPM: 0.6
2491 Male, age 75, both hemispheres 0.7
2196 Female, age 79, unknown 0.6
2198 Male, age 80, both hemispheres 0.6
2284 Female, age 91, both hemispheres 0.6
2392 Female, age 94, both hemispheres 0.6
1956 Male, age 74, unknown 0.5
2292 Female, age 85, both hemispheres 0.5
2568 Male, age 61, both hemispheres 0.5
2645 Female, age 72, unknown 0.5
Globus pallidus, externus
nTPM: 0.5
2567 Female, age 72, unknown 0.6
1996 Male, age 80, right hemisphere 0.5
2395 Male, age 75, both hemispheres 0.5
2646 Male, age 61, right hemisphere 0.5
2772 Female, age 79, unknown 0.5
Globus pallidus, internus
nTPM: 0.6
1818 Male, age 74, unknown 0.6
2037 Male, age 80, right hemisphere 0.6
2111 Female, age 85, right hemisphere 0.6
2287 Male, age 75, right hemisphere 0.6
2483 Female, age 94, right hemisphere 0.5
2566 Female, age 72, unknown 0.5
2778 Female, age 91, both hemispheres 0.5
Nucleus accumbens
nTPM: 0.6
1856 Female, age 91, right hemisphere 0.7
1783 Male, age 74, unknown 0.6
2286 Male, age 75, left hemisphere 0.6
2732 Male, age 80, right hemisphere 0.6
2824 Male, age 61, right hemisphere 0.6
1806 Female, age 85, left hemisphere 0.5
2391 Female, age 94, left hemisphere 0.5
2698 Female, age 72, unknown 0.5
Nucleus basalis of Meynert
nTPM: 0.5
2393 Male, age 80, right hemisphere 0.6
2484 Female, age 94, left hemisphere 0.5
2569 Male, age 61, both hemispheres 0.5
2821 Male, age 75, both hemispheres 0.5
Nucleus of the diagonal band
nTPM: 0.6
1979 Male, age 74, unknown 0.6
2029 Male, age 61, right hemisphere 0.6
2195 Female, age 85, both hemispheres 0.6
2775 Male, age 80, right hemisphere 0.6
1812 Female, age 91, both hemispheres 0.5
Olfactory tubercle
nTPM: 0.6
2856 Male, age 75, right hemisphere 0.7
1846 Male, age 80, right hemisphere 0.6
2487 Female, age 94, left hemisphere 0.6
1998 Female, age 91, both hemispheres 0.5
Putamen
nTPM: 0.6
1829 Male, age 74, unknown 0.6
1937 Female, age 91, right hemisphere 0.6
2466 Female, age 79, unknown 0.6
2489 Female, age 72, unknown 0.6
1838 Male, age 80, right hemisphere 0.5
2482 Female, age 94, left hemisphere 0.5
2647 Male, age 75, left hemisphere 0.5
Septal nuclei
nTPM: 0.5
2394 Male, age 61, left hemisphere 0.6
2629 Female, age 94, right hemisphere 0.6
1960 Male, age 74, unknown 0.5
2009 Female, age 91, both hemispheres 0.5
2031 Female, age 72, unknown 0.5
2059 Female, age 85, both hemispheres 0.5
2199 Male, age 80, right hemisphere 0.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.2
Samples: 246

Max nTPM: 25.6
Min nTPM: 1.2
Std nTPM: 3.8
Median nTPM: 8.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 25.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 25.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 18.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 18.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 16.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 16.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 16.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 16.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 15.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 15.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 15.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.3
Samples: 246

Max nTPM: 28.0
Min nTPM: 0.7
Std nTPM: 5.3
Median nTPM: 9.1
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 28.0
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 24.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 24.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 24.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 23.3
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 22.9
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 22.8
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 22.7
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 21.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 21.8
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 21.8
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Brain - Putamen (basal ganglia)
Average nTPM: 10.8
Samples: 205

Max nTPM: 24.8
Min nTPM: 0.0
Std nTPM: 3.9
Median nTPM: 10.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 24.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 22.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 21.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 19.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 19.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 18.9
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 18.6
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 17.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 17.9
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 17.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 17.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.1
FF:10161-103A8 76 years, female 0.3
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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