MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:88.0 nTPM
HPA:88.0 nTPM
GTEx:67.4 nTPM
FANTOM5:127.1 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 88.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.6
2411 Female, age 72, unknown 89.3
1830 Male, age 51, unknown 84.3
1833 Male, age 53, unknown 81.4
2019 Male, age 18, unknown 81.2
2586 Male, age 75, left hemisphere 81.1
2666 Male, age 74, left hemisphere 79.5
2828 Female, age 72, unknown 78.4
1870 Female, age 42, unknown 78.3
1827 Male, age 72, unknown 76.6
2219 Male, age 76, both hemispheres 76.5
Dorsal raphe nucleus
nTPM: 73.4
2750 Male, age 76, both hemispheres 88.2
1828 Male, age 53, unknown 72.0
2047 Male, age 72, unknown 69.3
2016 Female, age 72, unknown 69.0
2298 Female, age 72, unknown 68.4
Inferior colliculus
nTPM: 71.1
1890 Male, age 53, unknown 74.0
2849 Male, age 72, unknown 72.7
2097 Female, age 72, unknown 69.1
1848 Female, age 42, unknown 68.4
Median raphe nucleus
nTPM: 77.8
2220 Male, age 76, midline 77.8
Pedunculopontine tegmental nucleus
nTPM: 76.8
2338 Male, age 61, both hemispheres 79.4
2334 Male, age 80, both hemispheres 77.2
1921 Female, age 85, both hemispheres 73.9
Periaquaductal grey, anterior
nTPM: 73.7
2502 Female, age 75, unknown 79.1
1795 Male, age 51, unknown 72.0
1947 Male, age 18, unknown 70.0
Periaquaductal grey, dorsal
nTPM: 68.1
2464 Female, age 72, unknown 75.7
1831 Male, age 72, unknown 66.8
1840 Male, age 53, unknown 65.7
2850 Male, age 76, both hemispheres 64.2
Periaquaductal grey, lateral
nTPM: 69.2
2272 Male, age 74, both hemispheres 72.1
2053 Male, age 18, unknown 70.4
2140 Male, age 76, both hemispheres 65.0
Pretectal area
nTPM: 73.0
2407 Male, age 75, both hemispheres 79.1
1944 Female, age 72, unknown 77.9
1815 Male, age 53, unknown 76.6
2007 Male, age 72, unknown 75.4
2825 Male, age 18, unknown 74.3
1816 Male, age 51, unknown 73.6
1817 Female, age 42, unknown 73.0
2316 Male, age 76, right hemisphere 69.9
2667 Female, age 75, unknown 68.6
2273 Male, age 74, both hemispheres 67.9
2224 Female, age 72, unknown 66.3
Red nucleus
nTPM: 88.0
2503 Female, age 72, unknown 97.8
1865 Male, age 51, unknown 92.4
2588 Male, age 74, left hemisphere 91.6
1904 Male, age 53, unknown 90.9
2769 Male, age 72, unknown 90.3
2227 Male, age 72, unknown 90.0
2584 Male, age 75, left hemisphere 88.3
2823 Male, age 76, right hemisphere 83.7
2725 Female, age 75, unknown 83.5
2785 Male, age 18, unknown 83.5
1954 Female, age 42, unknown 82.2
1821 Female, age 72, unknown 81.7
Substantia nigra
nTPM: 75.4
2583 Male, age 75, right hemisphere 86.3
2699 Male, age 18, unknown 77.7
1851 Male, age 51, unknown 76.4
1889 Female, age 72, unknown 76.3
1916 Female, age 42, unknown 76.0
1941 Male, age 53, unknown 75.2
2590 Female, age 75, unknown 73.4
2409 Female, age 72, unknown 72.7
2241 Male, age 72, unknown 71.0
2665 Male, age 74, both hemispheres 69.3
Superior colliculus
nTPM: 77.8
1995 Male, age 72, unknown 83.3
1913 Female, age 42, unknown 82.9
2668 Female, age 75, unknown 82.5
2087 Female, age 72, unknown 78.1
2261 Male, age 18, unknown 77.8
1796 Male, age 53, unknown 76.0
1895 Male, age 76, right hemisphere 75.7
2587 Male, age 74, left hemisphere 75.1
1839 Male, age 51, unknown 74.2
2664 Male, age 75, both hemispheres 72.0
Ventral tegmental area
nTPM: 80.3
2223 Female, age 72, unknown 92.6
2410 Female, age 72, unknown 81.3
1915 Female, age 42, unknown 79.4
2218 Male, age 76, both hemispheres 78.9
1942 Male, age 51, unknown 75.9
2021 Male, age 53, unknown 73.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.4
Samples: 139

Max nTPM: 266.3
Min nTPM: 12.6
Std nTPM: 36.8
Median nTPM: 59.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 266.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 194.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 194.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 177.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 166.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 165.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 134.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 123.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 119.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 116.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 116.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 127.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 127.1
FF:10158-103A5 76 years, female 127.1

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The Human Protein Atlas

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