COLON - Expression summary
Protein expression
Coloni
h
m
l
n
Endothelial cells: High
Glandular cells: Low
Peripheral nerve/ganglion: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:42.5 nTPM
HPA:42.5 nTPM
GTEx:39.7 nTPM
FANTOM5:64.1 Scaled Tags Per Million

COLON - Antibody stainingi
Antibody HPA030287
Endothelial cells High
Glandular cells Low
Peripheral nerve/ganglion Medium


COLON - HPA RNA-seqi
Average nTPM 42.5
overview
Male, age 54 		Colon sample 67
nTPM: 36.3
Cell types%
Glandular cells:
65

Smooth muscle cells:
10

Other cell types:
25
overview
Female, age 57 		Colon sample 68
nTPM: 50.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55
overview
Male, age 80 		Colon sample 69
nTPM: 60.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40
overview
Male, age 68 		Colon sample 70
nTPM: 34.5
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 68 		Colon sample 76
nTPM: 70.4
Cell types%
Glandular cells:
25

Smooth muscle cells:
5

Other cell types:
70
overview
Female, age 61 		Colon sample 299
nTPM: 49.7
Cell types%
Glandular cells:
5

Smooth muscle cells:
65

Other cell types:
30
overview
Male, age 80 		Colon sample 300
nTPM: 45.5
Cell types%
Glandular cells:
15

Smooth muscle cells:
20

Other cell types:
65
overview
Female, age 78 		Colon sample 368
nTPM: 32
Cell types%
Glandular cells:
45

Smooth muscle cells:
5

Other cell types:
50
overview
Male, age 84 		Colon sample 381
nTPM: 34.6
Cell types%
Glandular cells:
50

Smooth muscle cells:
15

Other cell types:
35
overview
Male, age 80 		Colon sample 384
nTPM: 39.9
Cell types%
Glandular cells:
20

Smooth muscle cells:
35

Other cell types:
45
overview
Female, age 78 		Colon sample 389
nTPM: 36.6
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 69 		Colon sample 391
nTPM: 33.7
Cell types%
Glandular cells:
10

Smooth muscle cells:
45

Other cell types:
45
overview
Female, age 72 		Colon sample 403
nTPM: 29.2
Cell types%
Glandular cells:
20

Smooth muscle cells:
15

Other cell types:
65

COLON - GTEx RNA-seqi
Average nTPM 39.7
GTEx sample id Sample description nTPM
Colon - Sigmoid
Average nTPM: 39.7
Samples: 373

Max nTPM: 113.7
Min nTPM: 20.0
Std nTPM: 8.8
Median nTPM: 39.4
GTEX-15RJ7-1726-SM-6PAL3 40-49 years, male 113.7
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 79.2
GTEX-ZT9W-1726-SM-51MS3 50-59 years, male 65.1
GTEX-183WM-2526-SM-731BP 70-79 years, female 60.7
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 60.0
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 59.3
GTEX-11EQ8-2626-SM-5N9BO 60-69 years, male 58.4
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 58.0
GTEX-1PIEJ-1826-SM-EWRMN 20-29 years, female 57.3
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 56.8
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 56.8
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Colon - Transverse
Average nTPM: 38.6
Samples: 406

Max nTPM: 75.2
Min nTPM: 21.0
Std nTPM: 8.8
Median nTPM: 37.7
GTEX-13X6H-1926-SM-7EWD3 50-59 years, female 75.2
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 73.8
GTEX-14XAO-2026-SM-69LOI 60-69 years, female 73.3
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 72.6
GTEX-1IKOE-2026-SM-AHZ31 30-39 years, female 71.5
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 70.8
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 66.9
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 64.3
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 60.3
GTEX-ZVP2-1526-SM-5NQ82 50-59 years, male 59.9
GTEX-1CAMR-0926-SM-7MXTD 20-29 years, male 59.0
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COLON - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Colon
Scaled Tags Per Million: 64.1
FF:10014-101C5 62,83,84 years, mixed 64.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.