Colorectal cancer

The upper left dot plot(s) shows the consistency between the cancer type related cell lines and their corresponding TCGA disease cohort based on Spearman correlation and normalized enrichment score (NES). In the lower left is a list of the cell lines ranked according to their similarity to the cancer type. By clicking on a cell line in the dot plot or in the ranked list lollipop plots showing the activity of cancer-related pathways inferred using PROGENy and CytoSig cytokines for that particular cell line will be displayed. For more details about the analysis see Methods summary and information about all cell lines can be found here.

Colon Adenocarcinoma (COAD)

Explore the disease cohort in TCGA

Ranking Cell line Corr NES
1 HCC-56 0.83 2.35
2 CL-34 0.82 2.34
2 CL-40 0.83 2.22
4 CL-14 0.82 2.25
5 NCI-H684 0.83 2.18
6 SW403 0.83 2.17
7 SNU-283 0.83 2.17
7 SNU-C4 0.82 2.24
9 NCI-H508 0.82 2.26
10 SW1116 0.82 2.2
10 LS180 0.81 2.22
10 LS1034 0.81 2.23
10 SW1463 0.83 2.13
14 HT115 0.82 2.15
15 HT-55 0.82 2.16
15 SNU-61 0.82 2.11
17 T84 0.82 2.16
18 LS513 0.81 2.19
19 CW-2 0.82 2.05
19 SW948 0.82 2.14
21 SNU-C1 0.81 2.07
22 GP2d 0.8 2.16
23 SNU-1040 0.81 1.94
23 SNU-81 0.81 2.02
25 RCM-1 [Human rectal 0.81 2.02
26 SK-CO-1 0.81 1.99
26 CCK-81 0.8 2.11
28 LS411N 0.81 1.86
28 SNU-1033 0.81 1.98
30 LoVo 0.8 1.9
31 HT-29 0.8 1.78
32 SNU-407 0.79 1.98
33 SW1417 0.8 1.77
34 COLO 201 0.79 1.86
35 CL-11 0.79 1.68
36 SNU-1197 0.8 1.58
37 SNU-175 0.78 1.91
38 CACO-2 0.79 1.64
39 SW837 0.79 1.39
39 C2BBe1 0.78 1.67
41 LS123 0.79 1.43
42 SNU-C5 0.79 1.41
43 KM12 0.77 1.64
44 SW48 0.78 1.42
45 NCI-H747 0.78 1.32
45 NCI-H716 0.73 1.69
47 SW620 0.77 1.55
48 HCT 15 0.78 1.23
49 OUMS-23 0.75 1.41
49 SW480 0.77 1.29
51 SNU-C2A 0.77 0.9
52 COLO 678 0.77 1.03
53 COLO 320 0.72 1.32
54 HCT 116 0.76 0.68
54 SNU-503 0.75 0.88
56 RKO 0.72 1.19
57 MDST8 0.73 0.87
CELL LINE DATA
Cell line HCC-56
Patient: Female
Disease subtype: Adenocarcinoma
Primary/metastasis:
Sample collection site: Large intestine
Cellosaurus: CVCL_2917
PROGENy
CytoSig

Rectum Adenocarcinoma (READ)

Explore the disease cohort in TCGA

Ranking Cell line Corr NES
1 HCC-56 0.83 2.41
2 CL-14 0.83 2.33
2 CL-40 0.83 2.26
4 CL-34 0.82 2.42
5 NCI-H508 0.82 2.32
6 SNU-283 0.83 2.23
6 NCI-H684 0.83 2.22
6 HT-55 0.82 2.26
6 SW403 0.83 2.2
10 SW1116 0.82 2.28
11 SNU-C4 0.82 2.25
11 T84 0.82 2.27
11 LS1034 0.82 2.31
14 SNU-61 0.82 2.19
15 SW948 0.82 2.25
15 SW1463 0.83 2.15
17 HT115 0.82 2.21
18 LS180 0.81 2.23
19 LS513 0.81 2.25
20 CW-2 0.82 2.11
21 SNU-1033 0.81 2.19
21 SNU-C1 0.81 2.18
23 SNU-1040 0.81 2.07
23 RCM-1 [Human rectal 0.81 2.18
25 SK-CO-1 0.81 2.12
26 SNU-81 0.81 2.07
27 GP2d 0.8 2.17
28 CCK-81 0.8 2.13
29 LS411N 0.81 1.95
30 LoVo 0.8 2.01
31 SW1417 0.8 1.99
32 SNU-407 0.79 2.03
32 HT-29 0.8 1.86
34 COLO 201 0.79 1.98
35 CL-11 0.79 1.88
36 SNU-1197 0.8 1.72
37 CACO-2 0.79 1.82
38 SW837 0.79 1.5
38 SNU-175 0.78 1.89
40 C2BBe1 0.78 1.73
41 LS123 0.79 1.43
42 SW620 0.77 1.81
43 SNU-C5 0.79 1.34
43 SW48 0.78 1.42
45 KM12 0.77 1.54
46 NCI-H747 0.78 1.34
47 OUMS-23 0.76 1.65
48 NCI-H716 0.73 1.66
49 HCT 15 0.78 1.3
50 COLO 678 0.77 1.34
51 SW480 0.77 1.2
52 COLO 320 0.72 1.51
53 SNU-C2A 0.77 1.04
53 SNU-503 0.75 1.36
55 HCT 116 0.76 0.77
56 MDST8 0.73 0.89
57 RKO 0.72 1.01
CELL LINE DATA
Cell line HCC-56
Patient: Female
Disease subtype: Adenocarcinoma
Primary/metastasis:
Sample collection site: Large intestine
Cellosaurus: CVCL_2917
PROGENy
CytoSig

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