Head and neck cancer Head and Neck Squamous Cell Carcinoma (HNSC)

Head and neck cancer

The upper left dot plot(s) shows the consistency between the cancer type related cell lines and their corresponding TCGA disease cohort based on Spearman correlation and normalized enrichment score (NES). In the lower left is a list of the cell lines ranked according to their similarity to the cancer type. By clicking on a cell line in the dot plot or in the ranked list lollipop plots showing the activity of cancer-related pathways inferred using PROGENy and CytoSig cytokines for that particular cell line will be displayed. For more details about the analysis see Methods summary and information about all cell lines can be found here.

Head and Neck Squamous Cell Carcinoma (HNSC)

Explore the disease cohort in TCGA

Ranking	Cell line	Corr	NES
1	BICR 16	0.81	2.4
2	SCC-15	0.81	2.36
2	BICR 31	0.81	2.24
4	PE/CA-PJ34 (clone C1	0.81	2.15
5	SNU-1214	0.81	2.39
6	SCC-25	0.81	2.15
6	BICR 6	0.81	2.26
8	BICR 56	0.81	2.18
9	BICR 22	0.81	2.14
10	SCC-9	0.79	2.43
11	A-253	0.8	2.15
12	CAL-27	0.8	2.12
12	SCC-4	0.8	2.12
14	YD-10B	0.8	2.02
15	PE/CA-PJ49	0.8	1.8
16	SNU-1041	0.8	1.84
16	PE/CA-PJ41 (clone D2	0.8	1.87
18	SNU-899	0.79	1.93
18	HSC-2	0.79	2.01
20	PE/CA-PJ15	0.79	1.84
21	CAL-33	0.79	1.89
22	HSC-4	0.79	1.95
23	BHY	0.78	2
24	SNU-1076	0.78	1.72
24	YD-38	0.79	1.61
26	SNU-1066	0.78	1.63
27	Detroit 562	0.78	1.45
27	BICR 18	0.77	1.71
29	HSC-3	0.77	1.63
29	YD-15	0.78	1.49
31	FaDu	0.77	1.39
32	SNU-46	0.75	1.03
32	YD-8	0.77	0.96

CELL LINE DATA
Cell line	BICR 16
Patient:	Male
Disease subtype:	Squamous Cell Carcinoma, oral
Primary/metastasis:	Primary
Sample collection site:	Upper aerodigestive tract
Cellosaurus:	CVCL_2308
PROGENy

CytoSig