BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:0.9 nTPM
HPA:0.9 nTPM
GTEx:0.7 nTPM
FANTOM5:11.1 Scaled Tags Per Million
Pig:3.3 nTPM
Mouse:1.6 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA023778Antibody HPA024451
Glial cells LowNot detected
Neuronal cells LowLow




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.4
2846 Female, age 79, unknown 1.0
2288 Male, age 75, left hemisphere 0.6
1854 Male, age 80, left hemisphere 0.5
2481 Female, age 94, left hemisphere 0.5
2289 Male, age 61, right hemisphere 0.3
1781 Male, age 74, unknown 0.2
1857 Female, age 85, left hemisphere 0.2
2290 Female, age 72, unknown 0.2
Claustrum
nTPM: 0.5
2392 Female, age 94, both hemispheres 0.8
2568 Male, age 61, both hemispheres 0.8
2292 Female, age 85, both hemispheres 0.6
2491 Male, age 75, both hemispheres 0.6
1956 Male, age 74, unknown 0.4
2196 Female, age 79, unknown 0.4
2284 Female, age 91, both hemispheres 0.4
2198 Male, age 80, both hemispheres 0.3
2645 Female, age 72, unknown 0.3
Globus pallidus, externus
nTPM: 0.6
2567 Female, age 72, unknown 0.8
2395 Male, age 75, both hemispheres 0.7
1996 Male, age 80, right hemisphere 0.6
2772 Female, age 79, unknown 0.5
2646 Male, age 61, right hemisphere 0.4
Globus pallidus, internus
nTPM: 0.9
2111 Female, age 85, right hemisphere 1.3
2778 Female, age 91, both hemispheres 1.2
1818 Male, age 74, unknown 1.0
2287 Male, age 75, right hemisphere 1.0
2037 Male, age 80, right hemisphere 0.8
2566 Female, age 72, unknown 0.5
2483 Female, age 94, right hemisphere 0.4
Nucleus accumbens
nTPM: 0.7
1856 Female, age 91, right hemisphere 0.8
2286 Male, age 75, left hemisphere 0.8
2698 Female, age 72, unknown 0.8
1783 Male, age 74, unknown 0.6
1806 Female, age 85, left hemisphere 0.6
2391 Female, age 94, left hemisphere 0.6
2732 Male, age 80, right hemisphere 0.6
2824 Male, age 61, right hemisphere 0.6
Nucleus basalis of Meynert
nTPM: 0.5
2821 Male, age 75, both hemispheres 0.7
2393 Male, age 80, right hemisphere 0.4
2569 Male, age 61, both hemispheres 0.4
2484 Female, age 94, left hemisphere 0.3
Nucleus of the diagonal band
nTPM: 0.4
2029 Male, age 61, right hemisphere 0.8
1979 Male, age 74, unknown 0.6
1812 Female, age 91, both hemispheres 0.4
2195 Female, age 85, both hemispheres 0.2
2775 Male, age 80, right hemisphere 0.2
Olfactory tubercle
nTPM: 0.4
2487 Female, age 94, left hemisphere 0.5
2856 Male, age 75, right hemisphere 0.5
1846 Male, age 80, right hemisphere 0.3
1998 Female, age 91, both hemispheres 0.3
Putamen
nTPM: 0.5
1937 Female, age 91, right hemisphere 1.0
1829 Male, age 74, unknown 0.7
2482 Female, age 94, left hemisphere 0.7
2489 Female, age 72, unknown 0.4
1838 Male, age 80, right hemisphere 0.3
2647 Male, age 75, left hemisphere 0.3
2466 Female, age 79, unknown 0.1
Septal nuclei
nTPM: 0.3
2394 Male, age 61, left hemisphere 0.6
2629 Female, age 94, right hemisphere 0.6
2199 Male, age 80, right hemisphere 0.4
2009 Female, age 91, both hemispheres 0.3
1960 Male, age 74, unknown 0.2
2059 Female, age 85, both hemispheres 0.2
2031 Female, age 72, unknown 0.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.7
Samples: 246

Max nTPM: 3.2
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 0.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 3.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 2.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.6
Samples: 246

Max nTPM: 2.7
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 0.6
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 2.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 2.2
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 1.9
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 1.9
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 1.8
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 1.7
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 1.6
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 1.6
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 1.5
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 1.4
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 1.4
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Brain - Putamen (basal ganglia)
Average nTPM: 0.6
Samples: 205

Max nTPM: 2.1
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 0.6
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 2.1
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 1.9
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 1.8
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 1.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 1.5
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 1.5
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 1.5
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 1.4
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 1.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 1.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 1.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 5.2
FF:10164-103B2 76 years, female 5.2
Globus pallidus
Scaled Tags Per Million: 11.1
FF:10161-103A8 76 years, female 11.2
FF:10175-103C4 60 years, female 11.0
Nucleus accumbens
Scaled Tags Per Million: 6.9
FF:10037-101F1 23-56 years, mixed 6.9
Putamen
Scaled Tags Per Million: 5.6
FF:10176-103C5 60 years, female 5.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.3
Pig sample Sample description nTPM
Caudate
nTPM: 3.3
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.9
Sample A Female 3.9
Sample B Female 3.1
Sample C Male 2.9
Sample D Male 3.3
Putamen
nTPM: 3.2
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.9
Sample A Female 3.6
Sample B Female 3.0
Sample C Male 3.3
Sample D Male 2.9
Septum
nTPM: 3.2
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.9
Sample A Female 3.4
Sample B Female 3.2
Sample C Male 3.1
Sample D Male 2.9
Ventral pallidum
nTPM: 3.2
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.9
Sample A Female 3.1
Sample B Female 3.5
Sample C Male 2.9
Sample D Male 3.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.6
Samples: 4

Max nTPM: 1.8
Min nTPM: 1.5
Sample A Male 1.8
Sample B Male 1.6
Sample C Female 1.5
Sample D Female 1.6
Septum
nTPM: 0.8
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.6
Sample A Male 0.8
Sample B Male 1.2
Sample C Female 0.6
Sample D Female 0.6
Ventral forebrain
nTPM: 0.9
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.7
Sample A Male 1.2
Sample B Male 0.9
Sample C Female 0.7
Sample D Female 0.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71764946 Antisense, RP_050926_02_B06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71764946 Antisense, RP_050926_02_B06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

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