MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:37.1 nTPM
HPA:37.1 nTPM
GTEx:36.3 nTPM
FANTOM5:43.9 Scaled Tags Per Million
Pig:5.2 nTPM
Mouse:30.7 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.5
2411 Female, age 72, unknown 36.8
2586 Male, age 75, left hemisphere 36.8
2019 Male, age 18, unknown 36.7
1870 Female, age 42, unknown 36.0
2666 Male, age 74, left hemisphere 35.4
2828 Female, age 72, unknown 35.1
1833 Male, age 53, unknown 34.9
1827 Male, age 72, unknown 34.8
1830 Male, age 51, unknown 34.8
2219 Male, age 76, both hemispheres 33.2
Dorsal raphe nucleus
nTPM: 35.0
2750 Male, age 76, both hemispheres 35.9
2047 Male, age 72, unknown 35.5
2016 Female, age 72, unknown 35.1
1828 Male, age 53, unknown 34.7
2298 Female, age 72, unknown 34.0
Inferior colliculus
nTPM: 34.5
1890 Male, age 53, unknown 35.3
2097 Female, age 72, unknown 34.5
1848 Female, age 42, unknown 34.2
2849 Male, age 72, unknown 33.8
Median raphe nucleus
nTPM: 33.7
2220 Male, age 76, midline 33.7
Pedunculopontine tegmental nucleus
nTPM: 34.3
1921 Female, age 85, both hemispheres 35.6
2334 Male, age 80, both hemispheres 33.6
2338 Male, age 61, both hemispheres 33.6
Periaquaductal grey, anterior
nTPM: 35.0
2502 Female, age 75, unknown 35.2
1795 Male, age 51, unknown 35.0
1947 Male, age 18, unknown 34.7
Periaquaductal grey, dorsal
nTPM: 33.8
2464 Female, age 72, unknown 34.7
1831 Male, age 72, unknown 34.4
1840 Male, age 53, unknown 33.8
2850 Male, age 76, both hemispheres 32.3
Periaquaductal grey, lateral
nTPM: 34.1
2272 Male, age 74, both hemispheres 34.2
2140 Male, age 76, both hemispheres 34.1
2053 Male, age 18, unknown 33.9
Pretectal area
nTPM: 34.2
2407 Male, age 75, both hemispheres 35.5
1815 Male, age 53, unknown 34.9
1816 Male, age 51, unknown 34.8
1817 Female, age 42, unknown 34.6
2007 Male, age 72, unknown 34.6
2316 Male, age 76, right hemisphere 34.4
1944 Female, age 72, unknown 33.9
2224 Female, age 72, unknown 33.9
2825 Male, age 18, unknown 33.9
2667 Female, age 75, unknown 32.8
2273 Male, age 74, both hemispheres 32.7
Red nucleus
nTPM: 37.1
2588 Male, age 74, left hemisphere 40.4
2503 Female, age 72, unknown 39.3
1821 Female, age 72, unknown 37.4
2227 Male, age 72, unknown 37.4
1904 Male, age 53, unknown 37.3
2769 Male, age 72, unknown 37.3
2725 Female, age 75, unknown 36.9
1865 Male, age 51, unknown 36.2
1954 Female, age 42, unknown 36.2
2823 Male, age 76, right hemisphere 36.0
2584 Male, age 75, left hemisphere 35.8
2785 Male, age 18, unknown 35.4
Substantia nigra
nTPM: 35.0
2590 Female, age 75, unknown 36.8
2409 Female, age 72, unknown 36.5
2665 Male, age 74, both hemispheres 36.1
1851 Male, age 51, unknown 34.9
1941 Male, age 53, unknown 34.7
2699 Male, age 18, unknown 34.4
1889 Female, age 72, unknown 34.3
1916 Female, age 42, unknown 34.2
2241 Male, age 72, unknown 34.2
2583 Male, age 75, right hemisphere 33.8
Superior colliculus
nTPM: 34.4
2261 Male, age 18, unknown 36.0
2587 Male, age 74, left hemisphere 35.4
1895 Male, age 76, right hemisphere 34.6
1796 Male, age 53, unknown 34.4
2087 Female, age 72, unknown 34.3
2668 Female, age 75, unknown 34.3
1913 Female, age 42, unknown 34.2
1995 Male, age 72, unknown 34.2
1839 Male, age 51, unknown 33.7
2664 Male, age 75, both hemispheres 33.1
Ventral tegmental area
nTPM: 35.0
1942 Male, age 51, unknown 36.2
1915 Female, age 42, unknown 35.7
2223 Female, age 72, unknown 35.7
2410 Female, age 72, unknown 35.6
2021 Male, age 53, unknown 33.8
2218 Male, age 76, both hemispheres 32.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.3
Samples: 139

Max nTPM: 103.5
Min nTPM: 19.4
Std nTPM: 12.3
Median nTPM: 33.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 103.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 80.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 73.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 65.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 65.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 60.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 60.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 56.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 56.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 55.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 55.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.9
FF:10158-103A5 76 years, female 43.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.2
Pig sample Sample description nTPM
Midbrain
nTPM: 5.2
Samples: 4

Max nTPM: 6.6
Min nTPM: 4.5
Sample A Female 6.6
Sample B Female 4.5
Sample C Male 4.8
Sample D Male 5.0
Periaqueductal gray
nTPM: 4.5
Samples: 3

Max nTPM: 4.8
Min nTPM: 4.3
Sample B Female 4.8
Sample C Male 4.5
Sample D Male 4.3
Substantia nigra
nTPM: 5.0
Samples: 4

Max nTPM: 5.2
Min nTPM: 4.7
Sample A Female 4.8
Sample B Female 4.7
Sample C Male 5.2
Sample D Male 5.2
Superior colliculi
nTPM: 5.0
Samples: 4

Max nTPM: 5.3
Min nTPM: 4.5
Sample A Female 5.3
Sample B Female 4.5
Sample C Male 5.0
Sample D Male 5.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.7
Samples: 4

Max nTPM: 32.0
Min nTPM: 29.9
Sample A Male 29.9
Sample B Male 30.9
Sample C Female 32.0
Sample D Female 29.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
74822880 Antisense, RP_051130_02_E10, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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