MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:178.1 nTPM
HPA:178.1 nTPM
GTEx:238.1 nTPM
FANTOM5:332.3 Scaled Tags Per Million
Pig:3.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 178.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 116.9
2828 Female, age 72, unknown 142.9
2586 Male, age 75, left hemisphere 128.4
1827 Male, age 72, unknown 127.8
1870 Female, age 42, unknown 123.8
2411 Female, age 72, unknown 116.7
2666 Male, age 74, left hemisphere 114.1
1833 Male, age 53, unknown 112.4
1830 Male, age 51, unknown 106.9
2219 Male, age 76, both hemispheres 99.4
2019 Male, age 18, unknown 96.4
Dorsal raphe nucleus
nTPM: 178.1
2298 Female, age 72, unknown 233.7
2016 Female, age 72, unknown 214.3
2047 Male, age 72, unknown 157.5
1828 Male, age 53, unknown 157.1
2750 Male, age 76, both hemispheres 128.0
Inferior colliculus
nTPM: 122.9
2849 Male, age 72, unknown 127.6
2097 Female, age 72, unknown 126.6
1890 Male, age 53, unknown 122.9
1848 Female, age 42, unknown 114.6
Median raphe nucleus
nTPM: 142.0
2220 Male, age 76, midline 142.0
Pedunculopontine tegmental nucleus
nTPM: 131.6
2338 Male, age 61, both hemispheres 153.4
2334 Male, age 80, both hemispheres 126.9
1921 Female, age 85, both hemispheres 114.5
Periaquaductal grey, anterior
nTPM: 128.1
1795 Male, age 51, unknown 155.8
2502 Female, age 75, unknown 121.5
1947 Male, age 18, unknown 107.1
Periaquaductal grey, dorsal
nTPM: 164.2
2850 Male, age 76, both hemispheres 197.6
1840 Male, age 53, unknown 166.0
1831 Male, age 72, unknown 157.1
2464 Female, age 72, unknown 136.2
Periaquaductal grey, lateral
nTPM: 171.0
2053 Male, age 18, unknown 185.2
2272 Male, age 74, both hemispheres 164.1
2140 Male, age 76, both hemispheres 163.7
Pretectal area
nTPM: 127.8
2273 Male, age 74, both hemispheres 163.9
2224 Female, age 72, unknown 155.9
2825 Male, age 18, unknown 146.0
2407 Male, age 75, both hemispheres 130.0
2316 Male, age 76, right hemisphere 129.6
1815 Male, age 53, unknown 123.1
2667 Female, age 75, unknown 120.8
1816 Male, age 51, unknown 113.7
1944 Female, age 72, unknown 113.1
1817 Female, age 42, unknown 107.2
2007 Male, age 72, unknown 102.9
Red nucleus
nTPM: 111.3
2725 Female, age 75, unknown 130.6
2823 Male, age 76, right hemisphere 116.0
2769 Male, age 72, unknown 115.8
2503 Female, age 72, unknown 115.3
2227 Male, age 72, unknown 113.2
2584 Male, age 75, left hemisphere 112.3
1821 Female, age 72, unknown 109.5
1904 Male, age 53, unknown 107.5
1865 Male, age 51, unknown 107.0
1954 Female, age 42, unknown 106.2
2785 Male, age 18, unknown 102.1
2588 Male, age 74, left hemisphere 100.0
Substantia nigra
nTPM: 141.2
2699 Male, age 18, unknown 209.0
1851 Male, age 51, unknown 147.4
2590 Female, age 75, unknown 147.2
2583 Male, age 75, right hemisphere 139.9
2665 Male, age 74, both hemispheres 139.0
1941 Male, age 53, unknown 136.9
2409 Female, age 72, unknown 132.4
1916 Female, age 42, unknown 126.6
2241 Male, age 72, unknown 118.3
1889 Female, age 72, unknown 115.2
Superior colliculus
nTPM: 130.9
1995 Male, age 72, unknown 167.5
1913 Female, age 42, unknown 159.2
2664 Male, age 75, both hemispheres 138.6
1796 Male, age 53, unknown 134.7
2587 Male, age 74, left hemisphere 131.1
2087 Female, age 72, unknown 126.6
2261 Male, age 18, unknown 126.0
1839 Male, age 51, unknown 115.3
2668 Female, age 75, unknown 109.1
1895 Male, age 76, right hemisphere 100.8
Ventral tegmental area
nTPM: 150.1
1942 Male, age 51, unknown 163.7
2021 Male, age 53, unknown 163.0
1915 Female, age 42, unknown 161.8
2223 Female, age 72, unknown 149.2
2218 Male, age 76, both hemispheres 138.1
2410 Female, age 72, unknown 124.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 238.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 238.1
Samples: 139

Max nTPM: 744.3
Min nTPM: 53.7
Std nTPM: 139.2
Median nTPM: 191.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 744.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 720.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 652.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 621.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 596.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 587.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 529.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 509.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 498.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 481.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 470.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 332.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 332.3
FF:10158-103A5 76 years, female 332.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.2
Pig sample Sample description nTPM
Midbrain
nTPM: 1.9
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.5
Sample A Female 2.2
Sample B Female 2.2
Sample C Male 1.5
Sample D Male 1.8
Periaqueductal gray
nTPM: 3.2
Samples: 3

Max nTPM: 4.2
Min nTPM: 2.2
Sample B Female 2.2
Sample C Male 4.2
Sample D Male 3.1
Substantia nigra
nTPM: 2.3
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.9
Sample A Female 2.3
Sample B Female 2.6
Sample C Male 2.4
Sample D Male 1.9
Superior colliculi
nTPM: 1.6
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.3
Sample A Female 1.3
Sample B Female 1.4
Sample C Male 2.0
Sample D Male 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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