MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:54.7 nTPM
HPA:54.7 nTPM
GTEx:53.3 nTPM
FANTOM5:31.1 Scaled Tags Per Million
Pig:47.9 nTPM
Mouse:87.8 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.8
2586 Male, age 75, left hemisphere 65.5
2019 Male, age 18, unknown 57.4
2666 Male, age 74, left hemisphere 54.3
1827 Male, age 72, unknown 54.1
2828 Female, age 72, unknown 53.2
2411 Female, age 72, unknown 52.3
1870 Female, age 42, unknown 51.3
1833 Male, age 53, unknown 50.2
2219 Male, age 76, both hemispheres 50.0
1830 Male, age 51, unknown 49.8
Dorsal raphe nucleus
nTPM: 50.8
1828 Male, age 53, unknown 54.1
2047 Male, age 72, unknown 52.6
2298 Female, age 72, unknown 49.7
2750 Male, age 76, both hemispheres 48.8
2016 Female, age 72, unknown 48.7
Inferior colliculus
nTPM: 52.1
1848 Female, age 42, unknown 53.8
1890 Male, age 53, unknown 51.8
2097 Female, age 72, unknown 51.4
2849 Male, age 72, unknown 51.4
Median raphe nucleus
nTPM: 47.1
2220 Male, age 76, midline 47.1
Pedunculopontine tegmental nucleus
nTPM: 50.2
2334 Male, age 80, both hemispheres 51.2
1921 Female, age 85, both hemispheres 50.7
2338 Male, age 61, both hemispheres 48.8
Periaquaductal grey, anterior
nTPM: 50.9
1795 Male, age 51, unknown 52.3
2502 Female, age 75, unknown 50.3
1947 Male, age 18, unknown 50.2
Periaquaductal grey, dorsal
nTPM: 48.4
1840 Male, age 53, unknown 49.9
2464 Female, age 72, unknown 48.5
1831 Male, age 72, unknown 48.4
2850 Male, age 76, both hemispheres 46.6
Periaquaductal grey, lateral
nTPM: 48.1
2053 Male, age 18, unknown 49.1
2272 Male, age 74, both hemispheres 47.8
2140 Male, age 76, both hemispheres 47.3
Pretectal area
nTPM: 53.3
1817 Female, age 42, unknown 60.3
2007 Male, age 72, unknown 58.9
1816 Male, age 51, unknown 58.8
1815 Male, age 53, unknown 56.5
1944 Female, age 72, unknown 55.9
2667 Female, age 75, unknown 53.3
2407 Male, age 75, both hemispheres 52.0
2825 Male, age 18, unknown 48.8
2316 Male, age 76, right hemisphere 47.7
2273 Male, age 74, both hemispheres 47.3
2224 Female, age 72, unknown 47.0
Red nucleus
nTPM: 52.1
1821 Female, age 72, unknown 54.7
2584 Male, age 75, left hemisphere 54.7
2785 Male, age 18, unknown 54.7
2588 Male, age 74, left hemisphere 53.6
2769 Male, age 72, unknown 51.8
1954 Female, age 42, unknown 51.5
2503 Female, age 72, unknown 51.5
1865 Male, age 51, unknown 51.3
2725 Female, age 75, unknown 51.3
2227 Male, age 72, unknown 50.3
1904 Male, age 53, unknown 50.1
2823 Male, age 76, right hemisphere 50.1
Substantia nigra
nTPM: 54.7
1889 Female, age 72, unknown 58.9
1916 Female, age 42, unknown 57.7
2409 Female, age 72, unknown 56.5
1851 Male, age 51, unknown 55.1
2583 Male, age 75, right hemisphere 54.7
1941 Male, age 53, unknown 54.6
2590 Female, age 75, unknown 53.1
2665 Male, age 74, both hemispheres 53.0
2699 Male, age 18, unknown 51.9
2241 Male, age 72, unknown 51.2
Superior colliculus
nTPM: 51.8
2668 Female, age 75, unknown 54.3
2087 Female, age 72, unknown 53.9
2664 Male, age 75, both hemispheres 53.1
2261 Male, age 18, unknown 52.1
1796 Male, age 53, unknown 51.9
1895 Male, age 76, right hemisphere 51.7
1839 Male, age 51, unknown 51.2
2587 Male, age 74, left hemisphere 50.9
1995 Male, age 72, unknown 50.2
1913 Female, age 42, unknown 48.9
Ventral tegmental area
nTPM: 51.7
2410 Female, age 72, unknown 57.1
1915 Female, age 42, unknown 53.8
2218 Male, age 76, both hemispheres 50.7
2223 Female, age 72, unknown 49.9
1942 Male, age 51, unknown 49.7
2021 Male, age 53, unknown 48.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.3
Samples: 139

Max nTPM: 117.5
Min nTPM: 28.3
Std nTPM: 12.1
Median nTPM: 51.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 117.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 99.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 88.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 85.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 82.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 80.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 74.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 74.1
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 73.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 67.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 67.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.1
FF:10158-103A5 76 years, female 31.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.9
Pig sample Sample description nTPM
Midbrain
nTPM: 44.0
Samples: 4

Max nTPM: 59.2
Min nTPM: 35.2
Sample A Female 39.5
Sample B Female 35.2
Sample C Male 59.2
Sample D Male 41.9
Periaqueductal gray
nTPM: 32.1
Samples: 3

Max nTPM: 35.7
Min nTPM: 28.7
Sample B Female 31.8
Sample C Male 35.7
Sample D Male 28.7
Substantia nigra
nTPM: 38.4
Samples: 4

Max nTPM: 47.7
Min nTPM: 31.7
Sample A Female 47.7
Sample B Female 31.7
Sample C Male 41.1
Sample D Male 32.9
Superior colliculi
nTPM: 47.9
Samples: 4

Max nTPM: 56.0
Min nTPM: 39.2
Sample A Female 51.5
Sample B Female 39.2
Sample C Male 56.0
Sample D Male 44.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 87.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 87.8
Samples: 4

Max nTPM: 94.2
Min nTPM: 83.4
Sample A Male 94.2
Sample B Male 85.6
Sample C Female 83.4
Sample D Female 87.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
386018 Antisense, RP_040804_01_A05, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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