MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:48.5 nTPM
HPA:48.5 nTPM
GTEx:87.6 nTPM
FANTOM5:118.3 Scaled Tags Per Million
Pig:104.6 nTPM
Mouse:6.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.8
2828 Female, age 72, unknown 52.4
2666 Male, age 74, left hemisphere 44.5
1833 Male, age 53, unknown 40.3
1830 Male, age 51, unknown 39.6
2219 Male, age 76, both hemispheres 38.9
2019 Male, age 18, unknown 37.4
2586 Male, age 75, left hemisphere 36.7
1827 Male, age 72, unknown 33.3
1870 Female, age 42, unknown 32.9
2411 Female, age 72, unknown 32.1
Dorsal raphe nucleus
nTPM: 46.8
2047 Male, age 72, unknown 61.4
1828 Male, age 53, unknown 59.5
2016 Female, age 72, unknown 39.2
2298 Female, age 72, unknown 38.3
2750 Male, age 76, both hemispheres 35.8
Inferior colliculus
nTPM: 40.6
2849 Male, age 72, unknown 56.3
1848 Female, age 42, unknown 40.9
1890 Male, age 53, unknown 34.2
2097 Female, age 72, unknown 30.9
Median raphe nucleus
nTPM: 48.5
2220 Male, age 76, midline 48.5
Pedunculopontine tegmental nucleus
nTPM: 35.9
2334 Male, age 80, both hemispheres 39.6
2338 Male, age 61, both hemispheres 37.6
1921 Female, age 85, both hemispheres 30.5
Periaquaductal grey, anterior
nTPM: 33.7
1795 Male, age 51, unknown 35.7
2502 Female, age 75, unknown 35.7
1947 Male, age 18, unknown 29.5
Periaquaductal grey, dorsal
nTPM: 43.4
2850 Male, age 76, both hemispheres 53.3
2464 Female, age 72, unknown 46.3
1840 Male, age 53, unknown 39.8
1831 Male, age 72, unknown 34.3
Periaquaductal grey, lateral
nTPM: 40.9
2140 Male, age 76, both hemispheres 46.7
2272 Male, age 74, both hemispheres 43.6
2053 Male, age 18, unknown 32.4
Pretectal area
nTPM: 35.3
2825 Male, age 18, unknown 41.8
2273 Male, age 74, both hemispheres 39.5
1817 Female, age 42, unknown 36.6
2224 Female, age 72, unknown 35.1
2407 Male, age 75, both hemispheres 35.1
2667 Female, age 75, unknown 34.4
2007 Male, age 72, unknown 34.2
1815 Male, age 53, unknown 33.6
1944 Female, age 72, unknown 33.6
2316 Male, age 76, right hemisphere 33.2
1816 Male, age 51, unknown 31.4
Red nucleus
nTPM: 42.0
2503 Female, age 72, unknown 47.5
2823 Male, age 76, right hemisphere 46.4
2769 Male, age 72, unknown 45.7
2227 Male, age 72, unknown 45.3
2725 Female, age 75, unknown 44.3
2584 Male, age 75, left hemisphere 42.5
1954 Female, age 42, unknown 41.2
1865 Male, age 51, unknown 41.0
2785 Male, age 18, unknown 39.6
2588 Male, age 74, left hemisphere 37.7
1821 Female, age 72, unknown 36.8
1904 Male, age 53, unknown 36.3
Substantia nigra
nTPM: 39.9
2699 Male, age 18, unknown 62.5
2665 Male, age 74, both hemispheres 43.1
1916 Female, age 42, unknown 42.9
1851 Male, age 51, unknown 40.1
1941 Male, age 53, unknown 39.5
2590 Female, age 75, unknown 39.1
2583 Male, age 75, right hemisphere 36.4
2409 Female, age 72, unknown 34.2
1889 Female, age 72, unknown 33.8
2241 Male, age 72, unknown 27.3
Superior colliculus
nTPM: 35.2
2587 Male, age 74, left hemisphere 38.9
1796 Male, age 53, unknown 38.2
1839 Male, age 51, unknown 37.5
2087 Female, age 72, unknown 37.1
2664 Male, age 75, both hemispheres 36.5
1995 Male, age 72, unknown 36.4
1895 Male, age 76, right hemisphere 33.9
2668 Female, age 75, unknown 31.3
1913 Female, age 42, unknown 31.1
2261 Male, age 18, unknown 30.6
Ventral tegmental area
nTPM: 38.7
2223 Female, age 72, unknown 45.0
1915 Female, age 42, unknown 38.8
2218 Male, age 76, both hemispheres 38.7
2021 Male, age 53, unknown 37.3
2410 Female, age 72, unknown 36.9
1942 Male, age 51, unknown 35.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 87.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 87.6
Samples: 139

Max nTPM: 288.2
Min nTPM: 12.8
Std nTPM: 44.2
Median nTPM: 82.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 288.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 257.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 221.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 194.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 173.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 167.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 161.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 160.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 157.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 152.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 150.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 118.3
FF:10158-103A5 76 years, female 118.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 104.6
Pig sample Sample description nTPM
Midbrain
nTPM: 103.3
Samples: 4

Max nTPM: 177.3
Min nTPM: 55.7
Sample A Female 177.3
Sample B Female 85.7
Sample C Male 94.4
Sample D Male 55.7
Periaqueductal gray
nTPM: 78.1
Samples: 3

Max nTPM: 81.6
Min nTPM: 75.2
Sample B Female 77.6
Sample C Male 81.6
Sample D Male 75.2
Substantia nigra
nTPM: 93.1
Samples: 4

Max nTPM: 115.7
Min nTPM: 79.3
Sample A Female 115.7
Sample B Female 91.6
Sample C Male 85.6
Sample D Male 79.3
Superior colliculi
nTPM: 104.6
Samples: 4

Max nTPM: 128.9
Min nTPM: 75.0
Sample A Female 128.9
Sample B Female 75.0
Sample C Male 107.4
Sample D Male 107.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.0
Samples: 4

Max nTPM: 8.6
Min nTPM: 4.3
Sample A Male 8.6
Sample B Male 4.3
Sample C Female 5.4
Sample D Female 5.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
74882616 Antisense, RP_060315_04_F07, Mouse strain C57BL/6J (56 days, male) 0.1
69735162 Antisense, RP_050503_02_B12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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