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NDUFAB1
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:104.3 nTPM
HPA:104.3 nTPM
GTEx:142.6 nTPM
FANTOM5:78.1 Scaled Tags Per Million
Pig:24.4 nTPM
Mouse:159.7 nTPM
Allen mouse:1.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 104.3
Sample id Sample description nTPM
Amygdala
nTPM: 101.5
2814 Male, age 76, right hemisphere 108.1
2514 Male, age 75, right hemisphere 102.4
1987 Female, age 91, left hemisphere 101.0
2517 Female, age 94, left hemisphere 100.7
2695 Female, age 67, right hemisphere 95.6
Basal amygdala
nTPM: 96.9
2243 Female, age 91, right hemisphere 101.0
2110 Male, age 80, left hemisphere 100.8
2685 Female, age 94, left hemisphere 97.4
2609 Male, age 75, right hemisphere 96.7
1955 Male, age 76, both hemispheres 96.4
2827 Female, age 67, right hemisphere 89.1
Central amygdala
nTPM: 100.2
1905 Male, age 76, both hemispheres 105.7
2826 Female, age 94, left hemisphere 100.4
2239 Male, age 80, left hemisphere 99.7
2515 Male, age 75, right hemisphere 99.1
2701 Female, age 91, right hemisphere 95.9
Corticomedial amygdala
nTPM: 99.9
2829 Male, age 80, left hemisphere 105.9
2242 Female, age 91, right hemisphere 102.1
2428 Male, age 75, right hemisphere 101.8
2429 Female, age 94, left hemisphere 99.3
2240 Male, age 76, both hemispheres 98.6
2535 Female, age 67, right hemisphere 91.4
Lateral amygdala
nTPM: 96.6
1883 Male, age 76, both hemispheres 104.5
2534 Female, age 94, left hemisphere 101.5
2516 Male, age 75, right hemisphere 100.2
2255 Female, age 91, right hemisphere 93.7
2256 Male, age 80, left hemisphere 92.3
2830 Female, age 67, right hemisphere 87.7
Stria terminalis, bed nucleus
nTPM: 104.3
1974 Female, age 91, both hemispheres 112.9
2486 Female, age 94, both hemispheres 101.4
2201 Male, age 74, unknown 98.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 142.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 142.6
Samples: 152

Max nTPM: 505.5
Min nTPM: 61.0
Std nTPM: 64.8
Median nTPM: 127.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 505.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 442.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 367.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 366.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 295.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 292.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 261.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 258.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 249.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 244.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 236.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 231.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 229.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 213.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 212.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 211.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 209.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 201.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 199.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 193.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 188.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 187.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 186.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 183.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 175.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 172.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 171.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 169.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 168.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 168.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 167.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 166.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 166.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 165.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 165.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 163.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 163.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 162.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 159.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 157.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 157.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 156.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 156.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 156.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 156.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 155.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 155.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 155.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 153.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 152.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 149.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 149.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 147.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 146.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 146.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 145.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 145.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 144.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 143.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 141.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 141.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 139.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 139.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 138.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 138.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 138.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 137.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 135.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 133.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 132.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 131.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 130.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 130.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 130.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 128.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 127.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 127.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 126.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 125.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 124.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 123.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 122.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 122.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 122.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 121.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 120.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 120.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 120.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 117.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 115.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 115.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 115.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 114.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 114.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 114.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 113.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 112.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 112.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 112.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 111.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 110.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 109.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 107.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 107.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 107.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 107.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 107.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 106.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 106.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 106.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 106.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 104.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 103.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 102.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 101.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 101.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 100.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 100.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 98.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 97.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 96.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 95.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 95.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 95.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 94.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 93.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 92.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 92.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 91.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 91.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 91.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 91.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 90.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 90.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 90.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 90.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 89.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 88.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 85.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 83.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 83.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 82.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 78.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 78.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 78.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 77.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 75.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 75.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 74.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 73.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 73.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 61.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 78.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 78.1
FF:10151-102I7 76 years, female 78.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 24.4
Pig sample Sample description nTPM
Amygdala
nTPM: 24.5
Samples: 4

Max nTPM: 30.6
Min nTPM: 20.1
Sample A Female 30.6
Sample B Female 22.1
Sample C Male 20.1
Sample D Male 25.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 159.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 159.7
Samples: 4

Max nTPM: 164.4
Min nTPM: 155.0
Sample A Male 157.7
Sample B Male 164.4
Sample C Female 161.8
Sample D Female 155.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.0
69174341 Antisense, RP_050329_02_B11, Mouse strain C57BL/6J (56 days, male) 1.0

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