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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:15.3 nTPM
GTEx:13.1 nTPM
FANTOM5:41.5 Scaled Tags Per Million
Pig:9.9 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 15.3
Sample id Sample description nTPM
Putamen
nTPM: 15.3
1937 Female, age 91, right hemisphere 17.9
1838 Male, age 80, right hemisphere 17.5
2482 Female, age 94, left hemisphere 16.0
1829 Male, age 74, unknown 15.0
2466 Female, age 79, unknown 14.5
2647 Male, age 75, left hemisphere 13.7
2489 Female, age 72, unknown 12.5

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 13.1
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 13.1
Samples: 205

Max nTPM: 25.7
Min nTPM: 7.2
Std nTPM: 3.2
Median nTPM: 12.4
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 25.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 24.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 21.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 21.3
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 21.2
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 20.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 20.6
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 20.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 20.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 19.4
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 19.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 19.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 19.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 19.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 18.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 18.4
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 17.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 17.9
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 17.8
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 17.7
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 17.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 17.6
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 17.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 17.2
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 17.1
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 16.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 16.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 16.6
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 16.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 16.5
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 16.4
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 16.3
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 16.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 16.1
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 16.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 16.1
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 16.1
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 16.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 15.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 15.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 15.6
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 15.6
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 15.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 15.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 15.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 14.9
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 14.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 14.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 14.8
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 14.8
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 14.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 14.6
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 14.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 14.6
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 14.3
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 14.2
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 14.2
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 14.2
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 14.1
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 14.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 14.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 14.0
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 14.0
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 14.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 14.0
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 14.0
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 14.0
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 14.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 13.9
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 13.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 13.7
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 13.7
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 13.7
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 13.7
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 13.7
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 13.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 13.5
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 13.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 13.4
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 13.4
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 13.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 13.2
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 13.2
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 13.1
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 13.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 13.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 13.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 12.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 12.8
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 12.8
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 12.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 12.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 12.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 12.7
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 12.7
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 12.6
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 12.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 12.6
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 12.6
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 12.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 12.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 12.5
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 12.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 12.4
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 12.4
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 12.4
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 12.3
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 12.3
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 12.3
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 12.3
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 12.3
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 12.2
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 12.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 12.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 12.2
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 12.1
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 12.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 12.0
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 12.0
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 12.0
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 11.9
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 11.9
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 11.9
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 11.9
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 11.9
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 11.8
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 11.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 11.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 11.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 11.6
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 11.6
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 11.4
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 11.4
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 11.4
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 11.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 11.3
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 11.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 11.3
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 11.2
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 11.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 11.2
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 11.1
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 11.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 11.0
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 10.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 10.9
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 10.9
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 10.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 10.9
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 10.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 10.8
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 10.8
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 10.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 10.8
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 10.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 10.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 10.7
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 10.7
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 10.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 10.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 10.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 10.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 10.6
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 10.4
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 10.3
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 10.3
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 10.3
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 10.3
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 10.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 10.2
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 10.1
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 10.0
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 10.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 10.0
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 10.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 9.9
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 9.9
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 9.8
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 9.8
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 9.8
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 9.7
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 9.4
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 9.4
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 9.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 9.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 9.3
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 9.2
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 9.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 9.1
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 9.0
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 9.0
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 8.9
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 8.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 8.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 8.8
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 8.8
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 8.8
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 8.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 8.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 8.4
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 8.3
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 8.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 8.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 8.1
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 7.2
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 41.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 41.5
FF:10176-103C5 60 years, female 41.5

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 9.9
Pig sample Sample description nTPM
Putamen
nTPM: 10.0
Samples: 4

Max nTPM: 12.6
Min nTPM: 8.4
Sample A Female 8.4
Sample B Female 9.8
Sample C Male 12.6
Sample D Male 9.0

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