MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:118.0 nTPM
HPA:118.0 nTPM
GTEx:167.4 nTPM
FANTOM5:129.0 Scaled Tags Per Million
Pig:118.9 nTPM
Mouse:511.2 nTPM
Allen mouse:7.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 118.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 108.5
2019 Male, age 18, unknown 132.9
2411 Female, age 72, unknown 111.4
1827 Male, age 72, unknown 109.9
2586 Male, age 75, left hemisphere 108.1
1870 Female, age 42, unknown 105.7
2828 Female, age 72, unknown 104.1
1833 Male, age 53, unknown 104.0
2219 Male, age 76, both hemispheres 103.6
1830 Male, age 51, unknown 102.6
2666 Male, age 74, left hemisphere 102.6
Dorsal raphe nucleus
nTPM: 108.5
1828 Male, age 53, unknown 118.1
2298 Female, age 72, unknown 114.3
2750 Male, age 76, both hemispheres 105.3
2047 Male, age 72, unknown 103.7
2016 Female, age 72, unknown 101.3
Inferior colliculus
nTPM: 112.6
2097 Female, age 72, unknown 125.3
1890 Male, age 53, unknown 115.9
1848 Female, age 42, unknown 110.9
2849 Male, age 72, unknown 98.3
Median raphe nucleus
nTPM: 99.3
2220 Male, age 76, midline 99.3
Pedunculopontine tegmental nucleus
nTPM: 108.8
2334 Male, age 80, both hemispheres 111.6
1921 Female, age 85, both hemispheres 110.5
2338 Male, age 61, both hemispheres 104.4
Periaquaductal grey, anterior
nTPM: 110.9
2502 Female, age 75, unknown 112.8
1947 Male, age 18, unknown 112.3
1795 Male, age 51, unknown 107.6
Periaquaductal grey, dorsal
nTPM: 98.7
1831 Male, age 72, unknown 101.4
2464 Female, age 72, unknown 100.9
1840 Male, age 53, unknown 97.0
2850 Male, age 76, both hemispheres 95.8
Periaquaductal grey, lateral
nTPM: 102.2
2272 Male, age 74, both hemispheres 111.6
2053 Male, age 18, unknown 100.3
2140 Male, age 76, both hemispheres 94.8
Pretectal area
nTPM: 118.0
1817 Female, age 42, unknown 138.5
2007 Male, age 72, unknown 134.5
1816 Male, age 51, unknown 133.9
1944 Female, age 72, unknown 133.5
2667 Female, age 75, unknown 121.3
1815 Male, age 53, unknown 117.8
2273 Male, age 74, both hemispheres 115.1
2316 Male, age 76, right hemisphere 106.2
2224 Female, age 72, unknown 103.8
2825 Male, age 18, unknown 97.5
2407 Male, age 75, both hemispheres 96.4
Red nucleus
nTPM: 116.4
1821 Female, age 72, unknown 133.2
2785 Male, age 18, unknown 126.5
2503 Female, age 72, unknown 120.8
1865 Male, age 51, unknown 117.2
1954 Female, age 42, unknown 116.1
2725 Female, age 75, unknown 116.0
2769 Male, age 72, unknown 114.8
2227 Male, age 72, unknown 114.7
1904 Male, age 53, unknown 114.2
2823 Male, age 76, right hemisphere 113.7
2588 Male, age 74, left hemisphere 107.4
2584 Male, age 75, left hemisphere 102.0
Substantia nigra
nTPM: 114.3
1889 Female, age 72, unknown 127.9
1916 Female, age 42, unknown 118.9
1851 Male, age 51, unknown 118.6
2409 Female, age 72, unknown 116.6
1941 Male, age 53, unknown 116.2
2241 Male, age 72, unknown 114.6
2665 Male, age 74, both hemispheres 110.5
2590 Female, age 75, unknown 108.2
2699 Male, age 18, unknown 106.5
2583 Male, age 75, right hemisphere 104.9
Superior colliculus
nTPM: 110.3
2087 Female, age 72, unknown 123.7
1895 Male, age 76, right hemisphere 115.9
2587 Male, age 74, left hemisphere 113.4
1995 Male, age 72, unknown 111.2
1796 Male, age 53, unknown 110.5
2261 Male, age 18, unknown 108.6
2668 Female, age 75, unknown 108.4
1913 Female, age 42, unknown 108.3
1839 Male, age 51, unknown 105.7
2664 Male, age 75, both hemispheres 97.7
Ventral tegmental area
nTPM: 107.7
2410 Female, age 72, unknown 122.5
1915 Female, age 42, unknown 111.3
2218 Male, age 76, both hemispheres 109.9
1942 Male, age 51, unknown 102.2
2223 Female, age 72, unknown 101.7
2021 Male, age 53, unknown 98.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 167.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 167.4
Samples: 139

Max nTPM: 281.2
Min nTPM: 82.8
Std nTPM: 37.6
Median nTPM: 164.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 281.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 268.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 259.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 258.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 245.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 233.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 231.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 227.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 225.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 223.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 219.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 129.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 129.0
FF:10158-103A5 76 years, female 129.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 118.9
Pig sample Sample description nTPM
Midbrain
nTPM: 101.4
Samples: 4

Max nTPM: 121.5
Min nTPM: 81.1
Sample A Female 102.5
Sample B Female 81.1
Sample C Male 121.5
Sample D Male 100.3
Periaqueductal gray
nTPM: 66.4
Samples: 3

Max nTPM: 78.6
Min nTPM: 51.9
Sample B Female 78.6
Sample C Male 68.7
Sample D Male 51.9
Substantia nigra
nTPM: 81.2
Samples: 4

Max nTPM: 108.4
Min nTPM: 64.6
Sample A Female 108.4
Sample B Female 67.7
Sample C Male 83.9
Sample D Male 64.6
Superior colliculi
nTPM: 118.9
Samples: 4

Max nTPM: 153.9
Min nTPM: 88.9
Sample A Female 139.2
Sample B Female 88.9
Sample C Male 153.9
Sample D Male 93.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 511.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 511.2
Samples: 4

Max nTPM: 521.9
Min nTPM: 502.1
Sample A Male 521.9
Sample B Male 505.7
Sample C Female 502.1
Sample D Female 515.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.9
2592 Antisense, RP_040507_01_D05, Mouse strain C57BL/6J (56 days, male) 7.9
2591 Antisense, RP_040507_01_D05, Mouse strain C57BL/6J (56 days, male) 7.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.