MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:49.0 nTPM
HPA:49.0 nTPM
GTEx:50.7 nTPM
FANTOM5:17.1 Scaled Tags Per Million
Pig:7.6 nTPM
Mouse:29.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.0
2828 Female, age 72, unknown 49.6
2219 Male, age 76, both hemispheres 49.4
2586 Male, age 75, left hemisphere 48.8
2019 Male, age 18, unknown 48.0
1827 Male, age 72, unknown 45.5
2666 Male, age 74, left hemisphere 44.5
1833 Male, age 53, unknown 42.6
2411 Female, age 72, unknown 41.8
1830 Male, age 51, unknown 40.3
1870 Female, age 42, unknown 39.8
Dorsal raphe nucleus
nTPM: 41.7
2298 Female, age 72, unknown 45.4
2047 Male, age 72, unknown 42.8
1828 Male, age 53, unknown 41.3
2016 Female, age 72, unknown 40.7
2750 Male, age 76, both hemispheres 38.4
Inferior colliculus
nTPM: 46.1
1848 Female, age 42, unknown 47.0
2849 Male, age 72, unknown 46.8
1890 Male, age 53, unknown 46.0
2097 Female, age 72, unknown 44.7
Median raphe nucleus
nTPM: 41.6
2220 Male, age 76, midline 41.6
Pedunculopontine tegmental nucleus
nTPM: 40.4
1921 Female, age 85, both hemispheres 46.0
2334 Male, age 80, both hemispheres 39.1
2338 Male, age 61, both hemispheres 36.1
Periaquaductal grey, anterior
nTPM: 45.7
2502 Female, age 75, unknown 47.9
1795 Male, age 51, unknown 46.8
1947 Male, age 18, unknown 42.3
Periaquaductal grey, dorsal
nTPM: 46.4
1840 Male, age 53, unknown 50.6
2464 Female, age 72, unknown 47.9
2850 Male, age 76, both hemispheres 43.9
1831 Male, age 72, unknown 43.1
Periaquaductal grey, lateral
nTPM: 44.5
2140 Male, age 76, both hemispheres 47.4
2053 Male, age 18, unknown 43.4
2272 Male, age 74, both hemispheres 42.7
Pretectal area
nTPM: 49.0
1944 Female, age 72, unknown 55.5
1816 Male, age 51, unknown 55.2
2667 Female, age 75, unknown 55.0
1815 Male, age 53, unknown 51.1
2007 Male, age 72, unknown 50.6
1817 Female, age 42, unknown 49.5
2224 Female, age 72, unknown 45.7
2407 Male, age 75, both hemispheres 45.0
2273 Male, age 74, both hemispheres 44.7
2316 Male, age 76, right hemisphere 43.8
2825 Male, age 18, unknown 43.3
Red nucleus
nTPM: 41.2
2588 Male, age 74, left hemisphere 47.3
2785 Male, age 18, unknown 46.7
1954 Female, age 42, unknown 41.6
2227 Male, age 72, unknown 41.5
2769 Male, age 72, unknown 41.2
2584 Male, age 75, left hemisphere 40.5
2725 Female, age 75, unknown 40.2
2503 Female, age 72, unknown 39.8
2823 Male, age 76, right hemisphere 39.7
1865 Male, age 51, unknown 39.5
1904 Male, age 53, unknown 39.1
1821 Female, age 72, unknown 37.5
Substantia nigra
nTPM: 46.0
2665 Male, age 74, both hemispheres 54.4
1916 Female, age 42, unknown 50.2
2241 Male, age 72, unknown 48.5
1851 Male, age 51, unknown 47.0
1889 Female, age 72, unknown 46.8
2590 Female, age 75, unknown 44.5
2699 Male, age 18, unknown 44.2
1941 Male, age 53, unknown 44.0
2409 Female, age 72, unknown 41.9
2583 Male, age 75, right hemisphere 38.9
Superior colliculus
nTPM: 46.5
2087 Female, age 72, unknown 57.9
2664 Male, age 75, both hemispheres 51.5
1796 Male, age 53, unknown 48.9
2261 Male, age 18, unknown 47.9
1895 Male, age 76, right hemisphere 47.7
1839 Male, age 51, unknown 44.7
2587 Male, age 74, left hemisphere 44.0
2668 Female, age 75, unknown 41.5
1995 Male, age 72, unknown 41.4
1913 Female, age 42, unknown 39.7
Ventral tegmental area
nTPM: 44.1
1915 Female, age 42, unknown 46.0
2410 Female, age 72, unknown 45.6
1942 Male, age 51, unknown 44.7
2218 Male, age 76, both hemispheres 44.7
2021 Male, age 53, unknown 42.5
2223 Female, age 72, unknown 40.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.7
Samples: 139

Max nTPM: 164.5
Min nTPM: 5.7
Std nTPM: 26.7
Median nTPM: 46.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 164.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 131.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 119.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 113.0
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 107.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 99.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 97.5
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 97.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 95.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 92.6
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 91.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.1
FF:10158-103A5 76 years, female 17.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.6
Pig sample Sample description nTPM
Midbrain
nTPM: 7.6
Samples: 4

Max nTPM: 11.7
Min nTPM: 3.3
Sample A Female 3.3
Sample B Female 5.0
Sample C Male 10.4
Sample D Male 11.7
Periaqueductal gray
nTPM: 7.1
Samples: 3

Max nTPM: 8.3
Min nTPM: 6.4
Sample B Female 6.6
Sample C Male 8.3
Sample D Male 6.4
Substantia nigra
nTPM: 4.4
Samples: 4

Max nTPM: 5.7
Min nTPM: 3.4
Sample A Female 4.7
Sample B Female 3.6
Sample C Male 5.7
Sample D Male 3.4
Superior colliculi
nTPM: 7.4
Samples: 4

Max nTPM: 8.9
Min nTPM: 5.2
Sample A Female 6.9
Sample B Female 5.2
Sample C Male 8.6
Sample D Male 8.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.7
Samples: 4

Max nTPM: 32.3
Min nTPM: 28.7
Sample A Male 32.3
Sample B Male 29.2
Sample C Female 28.7
Sample D Female 28.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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