BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:66.2 nTPM
HPA:66.2 nTPM
GTEx:99.6 nTPM
FANTOM5:195.5 Scaled Tags Per Million
Pig:22.9 nTPM
Mouse:31.0 nTPM

CAUDATE - Antibody stainingi
Antibody HPA024662Antibody HPA025244
Glial cells LowLow
Neuronal cells LowLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 66.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 57.9
2289 Male, age 61, right hemisphere 69.0
2288 Male, age 75, left hemisphere 60.3
2290 Female, age 72, unknown 59.8
1781 Male, age 74, unknown 59.0
1857 Female, age 85, left hemisphere 57.7
1854 Male, age 80, left hemisphere 57.1
2846 Female, age 79, unknown 54.2
2481 Female, age 94, left hemisphere 45.7
Claustrum
nTPM: 57.8
2568 Male, age 61, both hemispheres 72.1
2645 Female, age 72, unknown 64.8
2491 Male, age 75, both hemispheres 63.4
2284 Female, age 91, both hemispheres 62.6
2198 Male, age 80, both hemispheres 56.1
2392 Female, age 94, both hemispheres 55.8
1956 Male, age 74, unknown 51.3
2196 Female, age 79, unknown 50.0
2292 Female, age 85, both hemispheres 43.8
Globus pallidus, externus
nTPM: 39.0
2646 Male, age 61, right hemisphere 45.2
2567 Female, age 72, unknown 41.0
2772 Female, age 79, unknown 37.8
2395 Male, age 75, both hemispheres 36.5
1996 Male, age 80, right hemisphere 34.7
Globus pallidus, internus
nTPM: 37.2
2483 Female, age 94, right hemisphere 42.1
1818 Male, age 74, unknown 39.4
2566 Female, age 72, unknown 39.1
2111 Female, age 85, right hemisphere 35.7
2037 Male, age 80, right hemisphere 35.6
2778 Female, age 91, both hemispheres 34.5
2287 Male, age 75, right hemisphere 34.0
Nucleus accumbens
nTPM: 55.4
2824 Male, age 61, right hemisphere 68.7
1783 Male, age 74, unknown 64.9
1856 Female, age 91, right hemisphere 57.5
1806 Female, age 85, left hemisphere 56.9
2286 Male, age 75, left hemisphere 56.4
2732 Male, age 80, right hemisphere 47.8
2698 Female, age 72, unknown 47.5
2391 Female, age 94, left hemisphere 43.7
Nucleus basalis of Meynert
nTPM: 52.4
2484 Female, age 94, left hemisphere 57.2
2393 Male, age 80, right hemisphere 53.3
2821 Male, age 75, both hemispheres 50.8
2569 Male, age 61, both hemispheres 48.4
Nucleus of the diagonal band
nTPM: 61.7
2029 Male, age 61, right hemisphere 78.7
2775 Male, age 80, right hemisphere 63.4
2195 Female, age 85, both hemispheres 61.5
1812 Female, age 91, both hemispheres 54.1
1979 Male, age 74, unknown 50.7
Olfactory tubercle
nTPM: 66.2
2487 Female, age 94, left hemisphere 71.1
2856 Male, age 75, right hemisphere 68.9
1998 Female, age 91, both hemispheres 65.3
1846 Male, age 80, right hemisphere 59.4
Putamen
nTPM: 58.9
2647 Male, age 75, left hemisphere 65.7
1838 Male, age 80, right hemisphere 63.4
1829 Male, age 74, unknown 58.9
2466 Female, age 79, unknown 58.8
2489 Female, age 72, unknown 58.8
1937 Female, age 91, right hemisphere 56.6
2482 Female, age 94, left hemisphere 50.4
Septal nuclei
nTPM: 56.3
2059 Female, age 85, both hemispheres 62.0
1960 Male, age 74, unknown 61.3
2629 Female, age 94, right hemisphere 60.6
2031 Female, age 72, unknown 59.0
2009 Female, age 91, both hemispheres 54.9
2394 Male, age 61, left hemisphere 50.7
2199 Male, age 80, right hemisphere 45.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 99.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 89.5
Samples: 246

Max nTPM: 153.7
Min nTPM: 28.9
Std nTPM: 22.0
Median nTPM: 89.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 153.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 153.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 152.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 148.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 147.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 141.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 137.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 136.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 133.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 132.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 132.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 99.6
Samples: 246

Max nTPM: 189.7
Min nTPM: 12.7
Std nTPM: 26.5
Median nTPM: 100.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 189.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 176.6
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 162.2
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 157.6
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 155.7
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 154.5
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 152.7
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 152.2
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 151.4
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 150.6
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 150.4
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Brain - Putamen (basal ganglia)
Average nTPM: 86.8
Samples: 205

Max nTPM: 160.1
Min nTPM: 20.6
Std nTPM: 24.2
Median nTPM: 84.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 160.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 158.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 151.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 149.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 149.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 137.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 134.7
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 132.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 131.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 130.5
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 128.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 195.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 195.5
FF:10164-103B2 76 years, female 195.5
Globus pallidus
Scaled Tags Per Million: 85.0
FF:10175-103C4 60 years, female 111.3
FF:10161-103A8 76 years, female 58.7
Nucleus accumbens
Scaled Tags Per Million: 170.0
FF:10037-101F1 23-56 years, mixed 170.0
Putamen
Scaled Tags Per Million: 187.3
FF:10176-103C5 60 years, female 187.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 22.9
Pig sample Sample description nTPM
Caudate
nTPM: 22.9
Samples: 4

Max nTPM: 26.8
Min nTPM: 17.4
Sample A Female 17.4
Sample B Female 25.2
Sample C Male 26.8
Sample D Male 22.3
Putamen
nTPM: 19.2
Samples: 4

Max nTPM: 24.9
Min nTPM: 7.8
Sample A Female 7.8
Sample B Female 21.8
Sample C Male 22.3
Sample D Male 24.9
Septum
nTPM: 12.0
Samples: 4

Max nTPM: 16.7
Min nTPM: 7.4
Sample A Female 14.8
Sample B Female 16.7
Sample C Male 7.4
Sample D Male 8.9
Ventral pallidum
nTPM: 15.6
Samples: 4

Max nTPM: 18.3
Min nTPM: 11.3
Sample A Female 17.1
Sample B Female 18.3
Sample C Male 11.3
Sample D Male 15.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 31.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 31.1
Samples: 4

Max nTPM: 38.1
Min nTPM: 27.4
Sample A Male 29.0
Sample B Male 27.4
Sample C Female 38.1
Sample D Female 29.7
Septum
nTPM: 11.5
Samples: 4

Max nTPM: 14.8
Min nTPM: 9.6
Sample A Male 14.8
Sample B Male 9.7
Sample C Female 9.6
Sample D Female 12.0
Ventral forebrain
nTPM: 22.7
Samples: 4

Max nTPM: 27.5
Min nTPM: 19.7
Sample A Male 27.5
Sample B Male 21.2
Sample C Female 19.7
Sample D Female 22.5

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The Human Protein Atlas

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