COLON - Expression summary
Protein expression
Coloni
h
m
l
n
Endothelial cells: Low
Glandular cells: Medium
Peripheral nerve/ganglion: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:35.7 nTPM
HPA:4.3 nTPM
GTEx:35.7 nTPM
FANTOM5:0.7 Scaled Tags Per Million

COLON - Antibody stainingi
Antibody HPA024662Antibody HPA025244
Endothelial cells LowLow
Glandular cells HighMedium
Peripheral nerve/ganglion LowLow





COLON - HPA RNA-seqi
Average nTPM 4.3
overview
Male, age 54 		Colon sample 67
nTPM: 3.5
Cell types%
Glandular cells:
65

Smooth muscle cells:
10

Other cell types:
25
overview
Female, age 57 		Colon sample 68
nTPM: 3.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55
overview
Male, age 80 		Colon sample 69
nTPM: 2.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40
overview
Male, age 68 		Colon sample 70
nTPM: 2.1
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 68 		Colon sample 76
nTPM: 2.5
Cell types%
Glandular cells:
25

Smooth muscle cells:
5

Other cell types:
70
overview
Female, age 61 		Colon sample 299
nTPM: 3.9
Cell types%
Glandular cells:
5

Smooth muscle cells:
65

Other cell types:
30
overview
Male, age 80 		Colon sample 300
nTPM: 4.1
Cell types%
Glandular cells:
15

Smooth muscle cells:
20

Other cell types:
65
overview
Female, age 78 		Colon sample 368
nTPM: 6.1
Cell types%
Glandular cells:
45

Smooth muscle cells:
5

Other cell types:
50
overview
Male, age 84 		Colon sample 381
nTPM: 5.9
Cell types%
Glandular cells:
50

Smooth muscle cells:
15

Other cell types:
35
overview
Male, age 80 		Colon sample 384
nTPM: 3.7
Cell types%
Glandular cells:
20

Smooth muscle cells:
35

Other cell types:
45
overview
Female, age 78 		Colon sample 389
nTPM: 3.9
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 69 		Colon sample 391
nTPM: 5
Cell types%
Glandular cells:
10

Smooth muscle cells:
45

Other cell types:
45
overview
Female, age 72 		Colon sample 403
nTPM: 9.7
Cell types%
Glandular cells:
20

Smooth muscle cells:
15

Other cell types:
65

COLON - GTEx RNA-seqi
Average nTPM 35.7
GTEx sample id Sample description nTPM
Colon - Sigmoid
Average nTPM: 35.7
Samples: 373

Max nTPM: 114.9
Min nTPM: 6.8
Std nTPM: 15.8
Median nTPM: 32.9
GTEX-1J8EW-2426-SM-CE6T5 60-69 years, female 114.9
GTEX-13OW8-2726-SM-5L3FZ 60-69 years, male 85.8
GTEX-YECK-2826-SM-5IFHF 60-69 years, male 83.4
GTEX-1HSMO-2526-SM-A9SKP 60-69 years, male 80.4
GTEX-16XZZ-2726-SM-7EWDO 60-69 years, male 79.9
GTEX-1JMLX-2526-SM-CY8HX 50-59 years, male 78.5
GTEX-13RTJ-1926-SM-5YYA2 60-69 years, male 77.3
GTEX-1JMPZ-2626-SM-ARU8Z 30-39 years, male 75.6
GTEX-13U4I-2626-SM-5SI9C 40-49 years, female 73.5
GTEX-1C6VQ-2626-SM-7IGMQ 50-59 years, male 72.8
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 70.9
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Colon - Transverse
Average nTPM: 21.0
Samples: 406

Max nTPM: 76.0
Min nTPM: 1.1
Std nTPM: 12.3
Median nTPM: 17.4
GTEX-1JMLX-2726-SM-CM2SB 50-59 years, male 76.0
GTEX-1LG7Y-2126-SM-DIPER 50-59 years, male 65.4
GTEX-1QMI2-2626-SM-E6CR4 60-69 years, male 60.4
GTEX-15DZA-0926-SM-69LQ3 30-39 years, female 58.4
GTEX-11GSP-1626-SM-5986N 60-69 years, female 58.2
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 54.8
GTEX-1PPGY-2826-SM-DTX9H 60-69 years, male 53.8
GTEX-13O61-1626-SM-5KM3T 60-69 years, male 53.1
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 51.2
GTEX-Y3I4-1426-SM-4TT9C 50-59 years, male 50.6
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 49.7
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COLON - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Colon
Scaled Tags Per Million: 0.7
FF:10014-101C5 62,83,84 years, mixed 0.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.