BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:0.6 nTPM
HPA:0.6 nTPM
GTEx:0.2 nTPM
FANTOM5:0.6 Scaled Tags Per Million
Mouse:3.1 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA049395Antibody HPA053288
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.5
1854 Male, age 80, left hemisphere 0.6
1857 Female, age 85, left hemisphere 0.6
2288 Male, age 75, left hemisphere 0.6
2290 Female, age 72, unknown 0.6
1781 Male, age 74, unknown 0.5
2846 Female, age 79, unknown 0.5
2289 Male, age 61, right hemisphere 0.4
2481 Female, age 94, left hemisphere 0.3
Claustrum
nTPM: 0.5
1956 Male, age 74, unknown 0.6
2292 Female, age 85, both hemispheres 0.5
2491 Male, age 75, both hemispheres 0.5
2568 Male, age 61, both hemispheres 0.5
2645 Female, age 72, unknown 0.5
2196 Female, age 79, unknown 0.4
2198 Male, age 80, both hemispheres 0.4
2284 Female, age 91, both hemispheres 0.4
2392 Female, age 94, both hemispheres 0.4
Globus pallidus, externus
nTPM: 0.5
2395 Male, age 75, both hemispheres 0.8
1996 Male, age 80, right hemisphere 0.5
2567 Female, age 72, unknown 0.5
2646 Male, age 61, right hemisphere 0.5
2772 Female, age 79, unknown 0.5
Globus pallidus, internus
nTPM: 0.5
2111 Female, age 85, right hemisphere 0.6
2287 Male, age 75, right hemisphere 0.6
1818 Male, age 74, unknown 0.5
2037 Male, age 80, right hemisphere 0.5
2566 Female, age 72, unknown 0.5
2778 Female, age 91, both hemispheres 0.5
2483 Female, age 94, right hemisphere 0.3
Nucleus accumbens
nTPM: 0.5
2286 Male, age 75, left hemisphere 0.6
1783 Male, age 74, unknown 0.5
1806 Female, age 85, left hemisphere 0.5
1856 Female, age 91, right hemisphere 0.5
2698 Female, age 72, unknown 0.5
2732 Male, age 80, right hemisphere 0.5
2824 Male, age 61, right hemisphere 0.5
2391 Female, age 94, left hemisphere 0.2
Nucleus basalis of Meynert
nTPM: 0.5
2821 Male, age 75, both hemispheres 0.7
2393 Male, age 80, right hemisphere 0.5
2484 Female, age 94, left hemisphere 0.5
2569 Male, age 61, both hemispheres 0.4
Nucleus of the diagonal band
nTPM: 0.6
1812 Female, age 91, both hemispheres 0.6
1979 Male, age 74, unknown 0.6
2195 Female, age 85, both hemispheres 0.6
2029 Male, age 61, right hemisphere 0.5
2775 Male, age 80, right hemisphere 0.5
Olfactory tubercle
nTPM: 0.6
2487 Female, age 94, left hemisphere 0.8
1998 Female, age 91, both hemispheres 0.6
2856 Male, age 75, right hemisphere 0.6
1846 Male, age 80, right hemisphere 0.5
Putamen
nTPM: 0.5
2647 Male, age 75, left hemisphere 0.7
1838 Male, age 80, right hemisphere 0.6
2489 Female, age 72, unknown 0.6
1829 Male, age 74, unknown 0.5
1937 Female, age 91, right hemisphere 0.4
2466 Female, age 79, unknown 0.4
2482 Female, age 94, left hemisphere 0.3
Septal nuclei
nTPM: 0.6
2394 Male, age 61, left hemisphere 0.9
2629 Female, age 94, right hemisphere 0.9
1960 Male, age 74, unknown 0.6
2009 Female, age 91, both hemispheres 0.6
2031 Female, age 72, unknown 0.6
2059 Female, age 85, both hemispheres 0.6
2199 Male, age 80, right hemisphere 0.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.2
Samples: 246

Max nTPM: 1.0
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 0.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 0.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 0.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 0.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 0.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 0.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 0.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 0.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 0.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 0.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.1
Samples: 246

Max nTPM: 1.3
Min nTPM: 0.0
Std nTPM: 0.1
Median nTPM: 0.1
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 1.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 0.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 0.7
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 0.6
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 0.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 0.6
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 0.6
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 0.5
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 0.5
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 0.5
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 0.5
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Brain - Putamen (basal ganglia)
Average nTPM: 0.2
Samples: 205

Max nTPM: 1.1
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 1.1
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 1.0
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 1.0
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 0.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 0.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 0.9
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 0.8
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 0.8
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 0.8
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 0.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 0.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.4
FF:10164-103B2 76 years, female 0.4
Globus pallidus
Scaled Tags Per Million: 0.6
FF:10175-103C4 60 years, female 0.7
FF:10161-103A8 76 years, female 0.5
Nucleus accumbens
Scaled Tags Per Million: 0.5
FF:10037-101F1 23-56 years, mixed 0.5
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.1
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.9
Sample A Male 3.0
Sample B Male 3.6
Sample C Female 2.9
Sample D Female 3.0
Septum
nTPM: 1.8
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.6
Sample A Male 2.0
Sample B Male 1.9
Sample C Female 1.7
Sample D Female 1.6
Ventral forebrain
nTPM: 2.9
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.5
Sample A Male 3.4
Sample B Male 2.5
Sample C Female 2.7
Sample D Female 3.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69514588 Antisense, RP_050419_03_F08, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69514588 Antisense, RP_050419_03_F08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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