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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:100.5 nTPM
HPA:100.5 nTPM
GTEx:185.4 nTPM
FANTOM5:752.7 Scaled Tags Per Million
Pig:201.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 100.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 82.6
1981 Female, age 72, midline 104.3
2048 Male, age 55, midline 93.3
2816 Male, age 47, midline 78.6
2194 Female, age 79, both hemispheres 77.7
2565 Male, age 75, midline 59.0
Cervical spinal cord, dorsal horn
nTPM: 100.5
2296 Male, age 66, both hemispheres 154.1
2173 Female, age 72, unknown 126.1
2069 Male, age 47, both hemispheres 104.6
1877 Male, age 55, unknown 84.5
2297 Male, age 75, both hemispheres 71.7
2721 Male, age 90, both hemispheres 61.9
Cervical spinal cord, ventral horn
nTPM: 83.5
2098 Female, age 72, unknown 113.7
2068 Male, age 55, unknown 86.6
2820 Female, age 79, both hemispheres 77.8
2809 Male, age 90, both hemispheres 75.9
2480 Male, age 75, both hemispheres 73.8
2295 Male, age 66, both hemispheres 73.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 185.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 185.4
Samples: 159

Max nTPM: 395.0
Min nTPM: 66.8
Std nTPM: 58.0
Median nTPM: 180.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 395.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 348.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 342.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 309.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 308.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 297.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 296.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 295.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 294.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 277.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 275.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 272.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 272.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 269.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 268.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 262.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 260.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 258.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 255.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 254.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 252.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 250.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 243.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 243.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 240.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 240.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 234.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 232.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 230.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 229.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 229.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 226.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 226.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 225.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 225.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 225.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 224.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 223.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 222.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 222.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 222.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 220.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 217.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 217.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 216.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 216.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 214.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 212.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 212.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 210.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 206.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 206.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 205.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 203.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 202.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 201.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 200.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 198.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 196.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 196.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 194.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 194.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 193.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 192.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 190.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 190.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 189.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 188.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 187.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 187.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 187.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 187.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 186.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 185.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 183.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 182.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 182.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 181.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 181.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 180.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 179.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 177.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 177.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 176.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 175.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 175.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 174.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 174.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 174.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 174.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 174.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 173.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 170.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 169.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 168.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 168.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 165.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 165.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 164.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 163.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 163.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 162.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 161.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 161.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 161.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 160.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 159.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 159.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 158.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 154.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 154.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 152.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 151.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 151.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 150.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 150.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 150.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 149.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 149.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 149.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 149.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 148.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 148.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 148.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 143.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 143.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 143.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 142.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 141.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 138.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 136.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 132.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 130.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 129.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 129.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 127.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 127.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 123.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 122.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 118.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 116.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 111.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 111.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 106.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 105.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 102.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 102.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 101.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 100.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 98.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 96.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 92.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 91.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 87.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 85.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 81.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 75.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 71.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 66.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 752.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 752.7
FF:10159-103A6 76 years, female 868.7
FF:10181-103D1 60 years, female 636.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 201.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 180.5
Samples: 4

Max nTPM: 208.7
Min nTPM: 164.3
Sample A Female 164.3
Sample B Female 208.7
Sample C Male 178.5
Sample D Male 170.5
Ventral spinal cord
nTPM: 201.2
Samples: 4

Max nTPM: 225.0
Min nTPM: 176.6
Sample A Female 197.4
Sample B Female 205.9
Sample C Male 176.6
Sample D Male 225.0

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