MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:47.7 nTPM
HPA:47.7 nTPM
GTEx:42.0 nTPM
FANTOM5:95.3 Scaled Tags Per Million
Pig:52.6 nTPM
Mouse:266.6 nTPM
Allen mouse:19.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.6
2019 Male, age 18, unknown 50.7
2586 Male, age 75, left hemisphere 48.2
1833 Male, age 53, unknown 46.1
1830 Male, age 51, unknown 45.5
1870 Female, age 42, unknown 44.1
2411 Female, age 72, unknown 44.0
2219 Male, age 76, both hemispheres 42.4
2666 Male, age 74, left hemisphere 42.3
2828 Female, age 72, unknown 41.9
1827 Male, age 72, unknown 41.0
Dorsal raphe nucleus
nTPM: 39.5
2750 Male, age 76, both hemispheres 41.7
1828 Male, age 53, unknown 40.5
2016 Female, age 72, unknown 38.7
2298 Female, age 72, unknown 38.4
2047 Male, age 72, unknown 38.1
Inferior colliculus
nTPM: 42.7
2097 Female, age 72, unknown 43.5
1848 Female, age 42, unknown 42.8
1890 Male, age 53, unknown 42.3
2849 Male, age 72, unknown 42.2
Median raphe nucleus
nTPM: 38.4
2220 Male, age 76, midline 38.4
Pedunculopontine tegmental nucleus
nTPM: 41.2
2334 Male, age 80, both hemispheres 42.8
2338 Male, age 61, both hemispheres 41.0
1921 Female, age 85, both hemispheres 39.8
Periaquaductal grey, anterior
nTPM: 39.9
2502 Female, age 75, unknown 42.0
1947 Male, age 18, unknown 40.0
1795 Male, age 51, unknown 37.8
Periaquaductal grey, dorsal
nTPM: 38.3
2464 Female, age 72, unknown 42.3
1831 Male, age 72, unknown 37.9
1840 Male, age 53, unknown 37.4
2850 Male, age 76, both hemispheres 35.7
Periaquaductal grey, lateral
nTPM: 37.7
2272 Male, age 74, both hemispheres 39.5
2053 Male, age 18, unknown 38.5
2140 Male, age 76, both hemispheres 35.0
Pretectal area
nTPM: 42.1
1817 Female, age 42, unknown 47.9
2007 Male, age 72, unknown 46.7
1815 Male, age 53, unknown 45.6
1944 Female, age 72, unknown 44.4
1816 Male, age 51, unknown 43.0
2407 Male, age 75, both hemispheres 42.2
2667 Female, age 75, unknown 40.5
2316 Male, age 76, right hemisphere 39.2
2825 Male, age 18, unknown 38.8
2273 Male, age 74, both hemispheres 37.9
2224 Female, age 72, unknown 36.9
Red nucleus
nTPM: 47.7
1865 Male, age 51, unknown 50.4
1904 Male, age 53, unknown 50.1
1954 Female, age 42, unknown 50.0
2785 Male, age 18, unknown 49.7
1821 Female, age 72, unknown 48.6
2503 Female, age 72, unknown 48.2
2725 Female, age 75, unknown 47.7
2769 Male, age 72, unknown 47.0
2227 Male, age 72, unknown 46.8
2588 Male, age 74, left hemisphere 46.5
2584 Male, age 75, left hemisphere 44.2
2823 Male, age 76, right hemisphere 42.8
Substantia nigra
nTPM: 44.6
2583 Male, age 75, right hemisphere 47.2
2409 Female, age 72, unknown 46.9
2241 Male, age 72, unknown 46.8
1851 Male, age 51, unknown 45.9
1889 Female, age 72, unknown 45.5
1916 Female, age 42, unknown 43.8
2665 Male, age 74, both hemispheres 43.7
1941 Male, age 53, unknown 42.4
2590 Female, age 75, unknown 41.7
2699 Male, age 18, unknown 41.7
Superior colliculus
nTPM: 43.2
2664 Male, age 75, both hemispheres 45.5
2668 Female, age 75, unknown 45.0
2087 Female, age 72, unknown 44.7
1913 Female, age 42, unknown 44.4
1995 Male, age 72, unknown 43.5
1839 Male, age 51, unknown 42.4
1895 Male, age 76, right hemisphere 42.4
2587 Male, age 74, left hemisphere 42.3
1796 Male, age 53, unknown 41.4
2261 Male, age 18, unknown 41.1
Ventral tegmental area
nTPM: 42.0
2410 Female, age 72, unknown 47.4
1915 Female, age 42, unknown 42.3
2223 Female, age 72, unknown 42.1
2218 Male, age 76, both hemispheres 41.4
1942 Male, age 51, unknown 39.8
2021 Male, age 53, unknown 39.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.0
Samples: 139

Max nTPM: 69.6
Min nTPM: 26.5
Std nTPM: 7.7
Median nTPM: 40.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 69.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 69.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 63.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 63.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 57.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 56.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 55.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 55.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 54.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 54.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 54.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.3
FF:10158-103A5 76 years, female 95.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.6
Pig sample Sample description nTPM
Midbrain
nTPM: 49.6
Samples: 4

Max nTPM: 65.4
Min nTPM: 37.1
Sample A Female 46.3
Sample B Female 49.7
Sample C Male 65.4
Sample D Male 37.1
Periaqueductal gray
nTPM: 35.3
Samples: 3

Max nTPM: 46.6
Min nTPM: 28.2
Sample B Female 46.6
Sample C Male 31.1
Sample D Male 28.2
Substantia nigra
nTPM: 38.7
Samples: 4

Max nTPM: 43.6
Min nTPM: 33.5
Sample A Female 43.6
Sample B Female 35.7
Sample C Male 33.5
Sample D Male 42.1
Superior colliculi
nTPM: 52.6
Samples: 4

Max nTPM: 66.4
Min nTPM: 44.5
Sample A Female 51.6
Sample B Female 44.5
Sample C Male 66.4
Sample D Male 47.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 266.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 266.6
Samples: 4

Max nTPM: 279.9
Min nTPM: 248.2
Sample A Male 248.2
Sample B Male 265.7
Sample C Female 272.7
Sample D Female 279.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 19.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.6
356858 Antisense, RP_040617_01_H08, Mouse strain C57BL/6J (56 days, male) 19.6
68192994 Antisense, RP_040617_01_H08, Mouse strain C57BL/6J (56 days, male) 18.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.